Zinc in PDB 9fgp: Cilia and Flagella Associated Protein 299

Protein crystallography data

The structure of Cilia and Flagella Associated Protein 299, PDB code: 9fgp was solved by N.D.Wright, L.Koekemoer, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.07 / 1.49
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 31.756, 34.449, 58.984, 91.35, 100, 90.09
R / Rfree (%) 17.5 / 21.9

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Cilia and Flagella Associated Protein 299 (pdb code 9fgp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Cilia and Flagella Associated Protein 299, PDB code: 9fgp:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 9fgp

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Zinc binding site 1 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:8.3
occ:1.00
OD1 A:ASP164 1.9 9.7 1.0
OE1 A:GLU125 2.0 9.0 1.0
CG A:ASP164 2.8 8.6 1.0
CD A:GLU125 2.8 9.2 1.0
OD2 A:ASP164 3.0 9.3 1.0
OE2 A:GLU125 3.1 11.6 1.0
O A:HOH433 3.7 7.0 1.0
O A:HOH420 3.7 15.1 1.0
CB A:ASP164 4.2 8.8 1.0
CG A:GLU125 4.3 8.4 1.0
N A:ASP164 4.6 8.0 1.0
CA A:ASP164 4.7 7.9 1.0
CB A:GLU125 4.7 7.9 1.0
N A:GLU125 4.8 7.4 1.0

Zinc binding site 2 out of 12 in 9fgp

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Zinc binding site 2 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:36.5
occ:0.60
OE2 A:GLU102 2.2 22.4 1.0
CD A:GLU102 3.0 17.7 1.0
OE1 A:GLU102 3.1 19.1 1.0
OG B:SER90 3.4 56.5 1.0
NH2 A:ARG106 3.7 21.5 1.0
O B:MET91 4.1 20.2 1.0
N B:MET91 4.3 31.8 1.0
CG A:GLU102 4.4 12.1 1.0
CE2 A:PHE145 4.5 16.8 1.0
CZ A:ARG106 4.7 18.1 1.0
O A:HOH510 4.7 29.8 1.0
CB B:SER90 4.7 45.7 1.0
NE A:ARG106 4.8 19.1 1.0
CD2 A:PHE145 4.8 16.4 1.0
C B:MET91 5.0 20.2 1.0
O A:HOH415 5.0 16.7 1.0

Zinc binding site 3 out of 12 in 9fgp

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Zinc binding site 3 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn303

b:23.8
occ:1.00
NH2 A:ARG154 3.1 10.7 1.0
NZ A:LYS149 3.2 9.1 1.0
O A:HOH504 3.3 17.3 1.0
O A:HOH518 3.5 26.5 1.0
CD A:LYS149 3.7 8.8 1.0
CE A:LYS149 3.7 8.7 1.0
O A:HOH425 3.9 8.3 1.0
NE A:ARG154 4.0 13.1 1.0
CZ A:ARG154 4.0 12.7 1.0
OH A:TYR144 4.1 7.6 1.0
CG A:LYS149 4.7 8.0 1.0
OE1 A:GLU139 5.0 14.4 1.0

Zinc binding site 4 out of 12 in 9fgp

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Zinc binding site 4 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn304

b:12.4
occ:0.33
CD2 A:HIS134 2.1 11.5 1.0
O A:HOH511 2.6 9.8 1.0
NE2 A:HIS134 3.0 12.8 1.0
CG A:HIS134 3.1 10.9 1.0
CD A:LYS137 3.1 28.8 1.0
ZN A:ZN306 3.5 8.5 0.5
CB A:HIS134 3.7 11.0 1.0
NZ A:LYS137 3.8 34.7 1.0
CG A:PRO174 3.9 9.0 1.0
CA A:HIS134 3.9 9.3 1.0
CB A:PRO174 4.0 9.6 1.0
CE A:LYS137 4.0 32.7 1.0
CE1 A:HIS134 4.1 13.6 1.0
ND1 A:HIS134 4.1 12.7 1.0
CG A:LYS137 4.2 26.8 1.0
CB A:LYS137 4.2 21.3 1.0
O A:HIS134 4.5 11.6 1.0
C A:HIS134 4.7 9.4 1.0
CG2 A:THR138 4.9 21.3 1.0
CD A:PRO174 4.9 9.3 1.0
N A:HIS134 5.0 8.7 1.0

Zinc binding site 5 out of 12 in 9fgp

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Zinc binding site 5 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn305

b:8.2
occ:1.00
OD2 A:ASP200 2.0 10.8 1.0
CG A:ASP200 2.6 10.1 1.0
OD1 A:ASP200 2.7 9.4 1.0
O A:HOH402 3.6 10.1 1.0
CB A:ASP200 4.1 9.6 1.0
CD A:PRO201 4.6 10.7 1.0
CG A:PRO201 4.8 11.2 1.0
CB A:LYS202 4.9 9.7 1.0

Zinc binding site 6 out of 12 in 9fgp

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Zinc binding site 6 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn306

b:8.5
occ:0.50
NE2 A:HIS134 2.0 12.8 1.0
CD2 A:HIS134 3.0 11.5 1.0
CE1 A:HIS134 3.0 13.6 1.0
CG2 A:THR138 3.5 21.3 1.0
ZN A:ZN304 3.5 12.4 0.3
CG A:HIS134 4.1 10.9 1.0
ND1 A:HIS134 4.1 12.7 1.0
CG A:PRO174 4.6 9.0 1.0
CB A:THR138 4.9 18.5 1.0

Zinc binding site 7 out of 12 in 9fgp

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Zinc binding site 7 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn307

b:49.7
occ:0.50
O A:HOH413 2.6 33.1 1.0
O A:HOH513 2.7 24.5 1.0
CG1 A:ILE228 2.9 27.7 1.0
CB A:ILE228 3.3 21.7 1.0
O A:ASN208 3.8 8.2 1.0
ND2 A:ASN208 3.9 11.6 1.0
CA A:ASN208 4.0 9.4 1.0
C A:ASN208 4.1 9.0 1.0
CG2 A:ILE228 4.2 21.1 1.0
CB A:ASN208 4.3 10.8 1.0
CD1 A:ILE228 4.3 28.5 1.0
CA A:ILE228 4.4 16.8 1.0
N A:ILE228 4.4 11.0 1.0
CG A:ASN208 4.5 13.3 1.0
O A:HOH456 4.8 30.8 1.0
O A:ILE228 4.8 26.9 1.0

Zinc binding site 8 out of 12 in 9fgp

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Zinc binding site 8 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:13.8
occ:0.50
CD2 B:HIS134 2.1 12.2 1.0
CD B:LYS137 2.8 22.9 1.0
NE2 B:HIS134 3.0 13.0 1.0
CG B:HIS134 3.1 11.3 1.0
CB B:HIS134 3.7 10.3 1.0
CE B:LYS137 3.8 31.3 1.0
NZ B:LYS137 3.8 29.9 1.0
CG B:PRO174 3.9 10.0 1.0
CB B:PRO174 3.9 8.9 1.0
CA B:HIS134 4.0 9.6 1.0
CG B:LYS137 4.0 27.1 1.0
CE1 B:HIS134 4.1 12.6 1.0
ND1 B:HIS134 4.2 13.4 1.0
CB B:LYS137 4.2 22.8 1.0
O B:HIS134 4.6 9.0 1.0
C B:HIS134 4.8 9.0 1.0
CG2 B:THR138 4.8 21.8 1.0
CD B:PRO174 5.0 9.9 1.0

Zinc binding site 9 out of 12 in 9fgp

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Zinc binding site 9 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn302

b:64.5
occ:0.50
OE2 B:GLU217 2.3 18.5 1.0
CD B:GLU217 3.5 16.7 1.0
CG B:GLU217 3.9 14.7 1.0
OE1 B:GLU217 4.5 19.8 1.0

Zinc binding site 10 out of 12 in 9fgp

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Zinc binding site 10 out of 12 in the Cilia and Flagella Associated Protein 299


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Cilia and Flagella Associated Protein 299 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn303

b:14.2
occ:0.50
OE1 B:GLU217 2.0 19.8 1.0
CD B:GLU217 2.8 16.7 1.0
OE2 B:GLU217 3.0 18.5 1.0
O B:HOH494 4.1 28.4 1.0
CG B:GLU217 4.3 14.7 1.0
CB B:GLU217 4.7 12.4 1.0

Reference:

N.D.Wright, L.Koekemoer, E.Williams, S.Wang, W.J.Bradshaw, H.Teare, Q.Gao, B.H.Balcomb, R.Duman, G.Winter, R.Keegan, M.Isupov, A.Lebedev, B.Marsden, F.Von Delft. Cilia and Flagella Associated Protein 299 To Be Published.
Page generated: Thu Oct 31 15:32:26 2024

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