Zinc in PDB 9ey0: Human Mitochondrial Rnase Z with Trna-His

Enzymatic activity of Human Mitochondrial Rnase Z with Trna-His

All present enzymatic activity of Human Mitochondrial Rnase Z with Trna-His:
1.1.1.159; 1.1.1.178; 1.1.1.239; 1.1.1.35; 1.1.1.53; 1.1.1.62; 2.1.1.218; 2.1.1.221; 3.1.26.11;

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Mitochondrial Rnase Z with Trna-His (pdb code 9ey0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human Mitochondrial Rnase Z with Trna-His, PDB code: 9ey0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 9ey0

Go back to Zinc Binding Sites List in 9ey0
Zinc binding site 1 out of 2 in the Human Mitochondrial Rnase Z with Trna-His


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Mitochondrial Rnase Z with Trna-His within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn901

b:139.2
occ:1.00
OD2 E:ASP666 2.0 94.2 1.0
NE2 E:HIS546 2.0 76.4 1.0
ND1 E:HIS548 2.0 83.3 1.0
NE2 E:HIS644 2.0 78.2 1.0
CE1 E:HIS548 2.6 80.5 1.0
CG E:ASP666 2.8 88.7 1.0
CB E:ASP666 2.9 84.7 1.0
CE1 E:HIS546 2.9 76.1 1.0
CD2 E:HIS644 2.9 81.4 1.0
CE1 E:HIS644 3.0 78.3 1.0
CD2 E:HIS546 3.0 76.3 1.0
CG E:HIS548 3.3 74.8 1.0
ZN E:ZN902 3.7 134.0 1.0
NE2 E:HIS548 3.8 79.1 1.0
CB E:HIS548 3.9 72.8 1.0
OD1 E:ASP666 4.0 87.4 1.0
ND1 E:HIS546 4.0 75.7 1.0
NE2 E:HIS551 4.0 75.8 1.0
CG E:HIS644 4.0 82.2 1.0
ND1 E:HIS644 4.0 81.5 1.0
CG E:HIS546 4.1 71.3 1.0
CD2 E:HIS548 4.2 72.6 1.0
CE1 E:HIS702 4.2 86.9 1.0
CA E:ASP666 4.3 80.9 1.0
CD2 E:HIS551 4.4 74.8 1.0
N E:ASP666 4.8 79.5 1.0
O E:ASP666 4.9 86.9 1.0
CE1 E:HIS551 4.9 76.5 1.0
O3' T:C69 4.9 105.3 1.0
NE2 E:HIS702 5.0 88.0 1.0

Zinc binding site 2 out of 2 in 9ey0

Go back to Zinc Binding Sites List in 9ey0
Zinc binding site 2 out of 2 in the Human Mitochondrial Rnase Z with Trna-His


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Mitochondrial Rnase Z with Trna-His within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn902

b:134.0
occ:1.00
OD2 E:ASP550 2.0 86.2 1.0
OD2 E:ASP666 2.0 94.2 1.0
NE2 E:HIS551 2.0 75.8 1.0
NE2 E:HIS724 2.0 73.9 1.0
CG E:ASP666 2.7 88.7 1.0
CE1 E:HIS724 2.8 70.0 1.0
OD1 E:ASP666 2.8 87.4 1.0
CD2 E:HIS551 2.9 74.8 1.0
CG E:ASP550 3.0 84.1 1.0
CE1 E:HIS551 3.0 76.5 1.0
CD2 E:HIS724 3.2 71.8 1.0
O E:SER490 3.4 94.3 1.0
OD1 E:ASP550 3.4 85.0 1.0
ZN E:ZN901 3.7 139.2 1.0
ND1 E:HIS724 4.0 67.5 1.0
CG E:HIS551 4.1 72.5 1.0
ND1 E:HIS551 4.1 76.8 1.0
CB E:ASP666 4.2 84.7 1.0
CG E:HIS724 4.2 67.7 1.0
NE2 E:HIS546 4.3 76.4 1.0
CB E:ASP550 4.3 78.3 1.0
CE1 E:HIS546 4.4 76.1 1.0
ND1 E:HIS548 4.4 83.3 1.0
C E:SER490 4.5 89.4 1.0
O3' T:C69 4.5 105.3 1.0
CB E:HIS548 4.8 72.8 1.0
O E:ASP550 4.9 88.1 1.0
CA E:SER490 4.9 85.2 1.0
CE1 E:HIS702 5.0 86.9 1.0

Reference:

G.Valentin Gese, B.M.Hallberg. Structural Basis of 3'-Trna Maturation By the Human Mitochondrial Rnase Z Complex Embo J. 2024.
ISSN: ESSN 1460-2075
Page generated: Wed Nov 27 21:12:08 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy