Zinc in PDB 9dg3: NCPRC1RYBP Delta-Linker Mutant Bound to Singly Modified H2AK119UB Nucleosome

The binding sites of Zinc atom in the NCPRC1RYBP Delta-Linker Mutant Bound to Singly Modified H2AK119UB Nucleosome (pdb code 9dg3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the NCPRC1RYBP Delta-Linker Mutant Bound to Singly Modified H2AK119UB Nucleosome, PDB code: 9dg3:

Zinc binding site 1 out of 1 in the NCPRC1RYBP Delta-Linker Mutant Bound to Singly Modified H2AK119UB Nucleosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of NCPRC1RYBP Delta-Linker Mutant Bound to Singly Modified H2AK119UB Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn301 b:265.2 occ:1.00 SG M:CYS44 2.3 195.9 1.0 SG M:CYS30 2.3 209.0 1.0 SG M:CYS41 2.3 205.4 1.0 SG M:CYS27 2.3 205.6 1.0 CB M:CYS27 3.1 203.2 1.0 CB M:CYS30 3.1 210.3 1.0 CB M:CYS41 3.4 201.1 1.0 N M:CYS30 3.5 211.9 1.0 CB M:CYS44 3.7 195.2 1.0 CA M:CYS30 3.7 211.7 1.0 CG2 M:VAL46 4.1 192.4 1.0 C M:CYS30 4.2 212.4 1.0 N M:THR31 4.2 211.0 1.0 N M:CYS44 4.3 195.4 1.0 N M:PHE32 4.5 207.1 1.0 CA M:CYS44 4.5 195.2 1.0 CA M:CYS27 4.5 202.6 1.0 ND2 M:ASN34 4.6 184.5 1.0 C M:VAL29 4.6 208.6 1.0 CB M:PHE32 4.8 205.3 1.0 CA M:CYS41 4.8 202.1 1.0 CB M:VAL29 4.8 207.2 1.0 N M:VAL29 4.8 207.2 1.0 N M:ASP45 4.9 201.0 1.0 O M:CYS30 5.0 212.1 1.0 CG1 M:VAL29 5.0 207.0 1.0 CA M:VAL29 5.0 208.6 1.0

V.Godinez-Lopez, M.I.Valencia-Sanchez, K.-J.Armache. NCPRC1RYBP Delta-Linker Mutant Bound to Singly Modified H2AK119UB Nucleosome To Be Published.