Zinc in PDB 9cnx: Cryoem Structure of Bam in Complex with the PTB1 Closed-State Inhibitor (in Ddm Detergent)

The binding sites of Zinc atom in the Cryoem Structure of Bam in Complex with the PTB1 Closed-State Inhibitor (in Ddm Detergent) (pdb code 9cnx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryoem Structure of Bam in Complex with the PTB1 Closed-State Inhibitor (in Ddm Detergent), PDB code: 9cnx:

Zinc binding site 1 out of 1 in the Cryoem Structure of Bam in Complex with the PTB1 Closed-State Inhibitor (in Ddm Detergent)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of Bam in Complex with the PTB1 Closed-State Inhibitor (in Ddm Detergent) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn901 b:14.3 occ:1.00 NE2 G:MHS11 1.8 59.3 1.0 ND1 G:HIS4 1.9 47.0 1.0 NE2 G:HIS9 1.9 52.1 1.0 CE1 G:MHS11 2.7 59.3 1.0 OD1 A:ASP500 2.7 62.1 1.0 CE1 G:HIS9 2.9 52.1 1.0 CG G:HIS4 2.9 47.0 1.0 CD2 G:MHS11 2.9 59.3 1.0 CD2 G:HIS9 3.0 52.1 1.0 CE1 G:HIS4 3.0 47.0 1.0 OD2 A:ASP500 3.1 62.1 1.0 CB G:HIS4 3.2 47.0 1.0 CG A:ASP500 3.3 62.1 1.0 ND1 G:MHS11 3.9 59.3 1.0 ND1 G:HIS9 4.0 52.1 1.0 CD2 G:HIS4 4.0 47.0 1.0 CG G:HIS9 4.0 52.1 1.0 CG G:MHS11 4.1 59.3 1.0 NE2 G:HIS4 4.1 47.0 1.0 CA G:HIS4 4.7 47.0 1.0 CB A:ASP500 4.8 62.1 1.0

D.Sun, K.M.Storek, D.Tegunov, Y.Yang, C.P.Arthur, M.Johnson, J.G.Quinn, W.Liu, G.Han, H.S.Girgis, M.K.Alexander, A.K.Murchison, S.Shriver, C.Tam, H.Ijiri, H.Inaba, T.Sano, H.Yanagida, J.Nishikawa, C.E.Heise, W.J.Fairbrother, M.W.Tan, N.Skelton, W.Sandoval, B.D.Sellers, C.Ciferri, P.A.Smith, P.C.Reid, C.N.Cunningham, S.T.Rutherford, J.Payandeh. The Discovery and Structural Basis of Two Distinct State-Dependent Inhibitors of Bama. Nat Commun V. 15 8718 2024.
ISSN: ESSN 2041-1723
PubMed: 39379361
DOI: 10.1038/S41467-024-52512-1