Zinc in PDB 9c3d: Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans

All present enzymatic activity of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans:
3.5.2.6;

The structure of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans, PDB code: 9c3d was solved by Y.Kim, N.Maltseva, L.Welk, M.Endres, A.Joachimiak, Center For Structuralbiology Of Infectious Diseases (Csbid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.20 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.176, 62.256, 72.387, 90, 90, 90
R / Rfree (%)	18.8 / 21.1

The binding sites of Zinc atom in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans (pdb code 9c3d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans, PDB code: 9c3d:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:30.0 occ:0.86 O A:HOH409 1.9 34.8 1.0 NE2 A:HIS165 2.2 32.6 1.0 ND1 A:HIS104 2.2 29.8 1.0 NE2 A:HIS102 2.3 29.9 1.0 CD2 A:HIS165 3.0 27.9 1.0 CE1 A:HIS102 3.1 31.6 1.0 CG A:HIS104 3.2 30.8 1.0 CE1 A:HIS104 3.2 30.4 1.0 CD2 A:HIS102 3.3 33.3 1.0 CE1 A:HIS165 3.4 30.0 1.0 ZN A:ZN302 3.4 32.4 0.4 CB A:HIS104 3.4 28.7 1.0 OD1 A:ASP106 3.8 35.4 1.0 SG A:CYS184 4.1 38.7 1.0 O A:HOH492 4.1 41.2 1.0 CB A:CYS184 4.1 31.2 1.0 CG A:HIS165 4.2 28.9 1.0 ND1 A:HIS102 4.2 28.5 1.0 CD2 A:HIS104 4.3 27.5 1.0 NE2 A:HIS104 4.3 32.1 1.0 CG A:HIS102 4.4 29.4 1.0 ND1 A:HIS165 4.4 29.3 1.0 OD2 A:ASP106 4.4 39.4 1.0 CG A:ASP106 4.5 37.0 1.0 CG2 A:THR166 4.6 29.0 1.0 CA A:HIS104 4.9 33.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra- LIKE_MBL-B1 From Dyadobacter Fermentans within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:32.4 occ:0.43 O A:HOH409 2.1 34.8 1.0 SG A:CYS184 2.3 38.7 1.0 NE2 A:HIS225 2.3 37.0 1.0 OD2 A:ASP106 2.3 39.4 1.0 O A:HOH492 2.4 41.2 1.0 CE1 A:HIS225 3.2 37.7 1.0 CG A:ASP106 3.3 37.0 1.0 CD2 A:HIS225 3.3 36.0 1.0 CB A:CYS184 3.4 31.2 1.0 ZN A:ZN301 3.4 30.0 0.9 OD1 A:ASP106 3.6 35.4 1.0 O A:HOH418 4.0 36.3 1.0 NE2 A:HIS165 4.1 32.6 1.0 ND1 A:HIS225 4.3 36.8 1.0 CG A:HIS225 4.4 33.2 1.0 CE1 A:HIS102 4.4 31.6 1.0 CE1 A:HIS165 4.4 30.0 1.0 O A:HOH404 4.5 30.6 1.0 NE2 A:HIS102 4.5 29.9 1.0 O A:HOH506 4.6 36.8 1.0 CA A:CYS184 4.6 26.3 1.0 CB A:ASP106 4.6 38.7 1.0 CD2 A:HIS165 4.9 27.9 1.0

Y.Kim, N.Maltseva, L.Welk, M.Endres, A.Joachimiak, Center For Structural Biology Of Infectious Diseases (Csbid). Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein Ccra-LIKE_MBL-B1 From Dyadobacter Fermentans To Be Published.