Zinc in PDB 8zin: Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate.

Enzymatic activity of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate.

All present enzymatic activity of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate.:
1.1.1.262;

Protein crystallography data

The structure of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate., PDB code: 8zin was solved by K.A.Kumar, D.Pahwa, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.93 / 2.50
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.295, 93.632, 165.595, 90, 90, 90
R / Rfree (%) 25.3 / 29

Other elements in 8zin:

The structure of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate. (pdb code 8zin). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate., PDB code: 8zin:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 8zin

Go back to Zinc Binding Sites List in 8zin
Zinc binding site 1 out of 4 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:22.9
occ:1.00
 O1' A:DOB403 1.9 41.5 1.0
NE2 A:HIS159 2.0 19.4 1.0
NE2 A:HIS255 2.1 18.9 1.0
CD2 A:HIS255 2.9 19.4 1.0
CE1 A:HIS159 3.0 19.1 1.0
CD2 A:HIS159 3.0 18.4 1.0
O2 A:DOB403 3.1 39.0 1.0
C1' A:DOB403 3.1 41.5 1.0
CE1 A:HIS255 3.2 19.2 1.0
NE2 A:HIS259 3.8 21.0 1.0
C2 A:DOB403 3.9 44.5 1.0
CD2 A:HIS259 3.9 19.9 1.0
C1 A:DOB403 3.9 47.3 1.0
O2' A:DOB403 4.0 37.5 1.0
ND1 A:HIS159 4.1 17.9 1.0
CG A:HIS159 4.1 18.0 1.0
CG A:HIS255 4.1 19.6 1.0
ND1 A:HIS255 4.2 19.5 1.0
CE1 A:HIS259 4.7 21.3 1.0
CG A:HIS259 4.8 20.4 1.0

Zinc binding site 2 out of 4 in 8zin

Go back to Zinc Binding Sites List in 8zin
Zinc binding site 2 out of 4 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:43.1
occ:1.00
 NE2 B:HIS159 2.0 42.8 1.0
NE2 B:HIS255 2.1 33.1 1.0
NE2 C:HIS203 2.4 53.3 1.0
O B:HOH522 2.6 15.6 1.0
CE1 B:HIS159 2.9 41.0 1.0
CD2 B:HIS255 3.0 33.6 1.0
CD2 B:HIS159 3.1 42.6 1.0
O B:HOH520 3.1 15.3 1.0
CE1 B:HIS255 3.2 33.6 1.0
CE1 C:HIS203 3.3 54.6 1.0
CD2 C:HIS203 3.3 47.0 1.0
NE2 B:HIS259 3.7 33.3 1.0
CD2 B:HIS259 3.9 31.6 1.0
ND1 B:HIS159 4.0 41.8 1.0
CG B:HIS159 4.1 41.1 1.0
CG B:HIS255 4.2 32.2 1.0
ND1 B:HIS255 4.3 32.7 1.0
ND1 C:HIS203 4.4 52.2 1.0
CG C:HIS203 4.4 47.5 1.0
CE1 B:HIS259 4.6 33.9 1.0
CD1 B:LEU158 4.7 34.5 1.0
CG B:HIS259 4.8 30.3 1.0
OD2 C:ASP239 4.9 35.8 1.0

Zinc binding site 3 out of 4 in 8zin

Go back to Zinc Binding Sites List in 8zin
Zinc binding site 3 out of 4 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:40.0
occ:1.00
 NE2 C:HIS159 2.0 57.8 1.0
NE2 C:HIS255 2.3 40.0 1.0
NE2 B:HIS203 2.4 25.6 1.0
O C:HOH510 2.7 23.8 1.0
CE1 C:HIS159 2.9 61.4 1.0
CE1 B:HIS203 3.0 27.9 1.0
CD2 C:HIS255 3.1 38.0 1.0
CD2 C:HIS159 3.1 57.6 1.0
CE1 C:HIS255 3.4 39.2 1.0
NE2 C:HIS259 3.6 45.0 1.0
CD2 B:HIS203 3.6 29.3 1.0
CD2 C:HIS259 3.7 43.5 1.0
ND1 C:HIS159 4.0 62.0 1.0
CG C:HIS159 4.2 57.8 1.0
ND1 B:HIS203 4.3 31.6 1.0
CG C:HIS255 4.3 37.7 1.0
ND1 C:HIS255 4.4 36.5 1.0
CE1 C:HIS259 4.5 43.6 1.0
O C:HOH522 4.5 25.1 1.0
CG B:HIS203 4.6 31.9 1.0
CG C:HIS259 4.7 42.7 1.0
OD2 B:ASP239 5.0 46.8 1.0

Zinc binding site 4 out of 4 in 8zin

Go back to Zinc Binding Sites List in 8zin
Zinc binding site 4 out of 4 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn404

b:25.4
occ:1.00
 O2' D:DOB401 1.9 36.6 1.0
NE2 D:HIS159 2.0 15.7 1.0
NE2 D:HIS255 2.1 13.7 1.0
O2 D:DOB401 2.5 40.3 1.0
C1' D:DOB401 2.8 36.4 1.0
C2 D:DOB401 2.9 39.1 1.0
CD2 D:HIS159 2.9 15.8 1.0
CD2 D:HIS255 2.9 13.8 1.0
C1 D:DOB401 3.0 39.0 1.0
CE1 D:HIS159 3.1 15.9 1.0
CE1 D:HIS255 3.2 14.2 1.0
NE2 D:HIS259 3.9 16.9 1.0
C3 D:DOB401 4.0 38.5 1.0
O1' D:DOB401 4.0 34.0 1.0
CD2 D:HIS259 4.0 17.1 1.0
CG D:HIS159 4.1 16.0 1.0
CG D:HIS255 4.1 14.5 1.0
ND1 D:HIS159 4.1 15.8 1.0
C6 D:DOB401 4.2 41.9 1.0
ND1 D:HIS255 4.2 14.0 1.0
CE1 D:HIS259 4.8 16.7 1.0
C4 D:DOB401 4.9 38.2 1.0
CG D:HIS259 4.9 18.0 1.0
C5 D:DOB401 5.0 41.5 1.0

Reference:

K.A.Kumar, D.Pahwa. Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 2,4-Dihydroxybenzoate. To Be Published.
Page generated: Thu Oct 31 14:12:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy