Zinc in PDB 8zhy: Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.

Enzymatic activity of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.

All present enzymatic activity of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.:
1.1.1.262;

Protein crystallography data

The structure of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2., PDB code: 8zhy was solved by K.A.Kumar, D.Pahwa, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.729, 93.776, 166.309, 90, 90, 90
R / Rfree (%) 28.3 / 33

Other elements in 8zhy:

The structure of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. (pdb code 8zhy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2., PDB code: 8zhy:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 8zhy

Go back to Zinc Binding Sites List in 8zhy
Zinc binding site 1 out of 3 in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:58.4
occ:1.00
 HE2 A:HIS159 1.3 16.7 0.0
HE2 A:HIS255 1.8 15.0 0.0
NE2 A:HIS159 2.1 16.7 1.0
NE2 A:HIS255 2.6 15.0 1.0
HE2 A:HIS259 3.0 20.9 0.0
CE1 A:HIS159 3.0 16.7 1.0
HE1 A:HIS159 3.1 16.7 1.0
CD2 A:HIS159 3.2 16.5 1.0
O A:HOH544 3.2 30.0 1.0
HD2 A:HIS259 3.4 20.9 1.0
HD2 A:HIS255 3.4 15.2 1.0
HD2 A:HIS159 3.4 16.5 1.0
CD2 A:HIS255 3.4 15.2 1.0
NE2 A:HIS259 3.4 20.9 1.0
CD2 A:HIS259 3.6 20.9 1.0
CE1 A:HIS255 3.7 15.0 1.0
HE1 A:HIS255 4.0 15.0 1.0
ND1 A:HIS159 4.1 16.3 1.0
CG A:HIS159 4.2 17.0 1.0
HD12 A:LEU158 4.3 18.1 1.0
CE1 A:HIS259 4.5 21.4 1.0
CG A:HIS255 4.6 15.8 1.0
ND1 A:HIS255 4.7 15.2 1.0
CG A:HIS259 4.8 21.4 1.0
HG A:LEU158 4.9 17.7 1.0
HD1 A:HIS159 4.9 16.3 0.0
HD22 A:LEU144 4.9 23.5 1.0
HE1 A:HIS259 4.9 21.4 1.0

Zinc binding site 2 out of 3 in 8zhy

Go back to Zinc Binding Sites List in 8zhy
Zinc binding site 2 out of 3 in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn404

b:58.2
occ:1.00
 HE2 C:HIS159 1.6 31.6 0.0
HE2 C:HIS255 2.1 36.7 0.0
HE2 B:HIS203 2.2 46.7 0.0
NE2 C:HIS159 2.5 31.6 1.0
HE1 B:HIS203 2.8 46.4 1.0
NE2 B:HIS203 2.8 46.7 1.0
NE2 C:HIS255 3.0 36.7 1.0
CE1 B:HIS203 3.1 46.4 1.0
HE2 C:HIS259 3.2 34.8 0.0
HD2 C:HIS259 3.3 34.7 1.0
CE1 C:HIS159 3.3 31.3 1.0
HE1 C:HIS159 3.4 31.3 1.0
CD2 C:HIS159 3.5 32.2 1.0
NE2 C:HIS259 3.6 34.8 1.0
HZ3 C:LYS263 3.7 44.1 1.0
HD2 C:HIS159 3.7 32.2 1.0
CD2 C:HIS259 3.7 34.7 1.0
CD2 C:HIS255 3.9 36.6 1.0
HD2 C:HIS255 3.9 36.6 1.0
CE1 C:HIS255 4.0 36.4 1.0
HE1 C:HIS255 4.1 36.4 1.0
CD2 B:HIS203 4.2 45.9 1.0
HZ2 C:LYS263 4.4 44.1 1.0
ND1 B:HIS203 4.4 46.7 1.0
NZ C:LYS263 4.4 44.1 1.0
ND1 C:HIS159 4.5 30.1 1.0
CG C:HIS159 4.6 31.9 1.0
HD2 B:HIS203 4.6 45.9 1.0
HD12 C:LEU158 4.7 29.0 1.0
CE1 C:HIS259 4.8 33.6 1.0
HZ1 C:LYS263 4.9 44.1 1.0
CG C:HIS259 4.9 33.9 1.0
CG B:HIS203 5.0 42.3 1.0
HD1 B:HIS203 5.0 46.7 0.0
OD2 B:ASP239 5.0 46.0 1.0

Zinc binding site 3 out of 3 in 8zhy

Go back to Zinc Binding Sites List in 8zhy
Zinc binding site 3 out of 3 in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn401

b:73.6
occ:1.00
 HE2 D:HIS159 1.4 21.0 0.0
HE2 D:HIS255 1.8 15.6 0.0
NE2 D:HIS159 2.3 21.0 1.0
NE2 D:HIS255 2.6 15.6 1.0
HE2 D:HIS259 3.1 25.7 0.0
O D:HOH537 3.1 30.0 1.0
HD2 D:HIS259 3.2 25.1 1.0
CD2 D:HIS159 3.3 20.3 1.0
CE1 D:HIS159 3.3 20.7 1.0
HD2 D:HIS159 3.4 20.3 1.0
HE1 D:HIS159 3.4 20.7 1.0
NE2 D:HIS259 3.5 25.7 1.0
CD2 D:HIS255 3.5 16.2 1.0
HD2 D:HIS255 3.5 16.2 1.0
CD2 D:HIS259 3.5 25.1 1.0
CE1 D:HIS255 3.6 16.0 1.0
HE1 D:HIS255 3.8 16.0 1.0
ND1 D:HIS159 4.4 20.3 1.0
CG D:HIS159 4.4 19.2 1.0
HD12 D:LEU158 4.5 18.3 1.0
CE1 D:HIS259 4.6 25.6 1.0
CG D:HIS255 4.7 16.4 1.0
CG D:HIS259 4.7 24.7 1.0
ND1 D:HIS255 4.7 16.4 1.0

Reference:

K.A.Kumar, D.Pahwa. Magnesium Substituted Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. To Be Published.
Page generated: Thu Oct 31 14:11:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy