Zinc in PDB 8z99: Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 (pdb code 8z99). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1, PDB code: 8z99:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Zinc binding site 1 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 1 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:203.3
occ:1.00
 SG A:CYS81 2.3 159.8 1.0
SG A:CYS84 2.3 149.8 1.0
SG A:CYS71 2.3 161.8 1.0
SG A:CYS87 2.3 149.2 1.0
CB A:CYS71 3.0 153.6 1.0
CB A:CYS81 3.3 156.0 1.0
CB A:CYS87 3.3 143.5 1.0
N A:CYS81 3.4 152.7 1.0
N A:GLY82 3.6 146.3 1.0
CB A:CYS84 3.7 145.7 1.0
N A:CYS71 3.7 154.9 1.0
N A:CYS84 3.8 144.7 1.0
CA A:CYS81 3.8 154.7 1.0
CA A:CYS71 3.9 153.4 1.0
C A:CYS81 4.2 154.1 1.0
N A:ARG83 4.2 151.4 1.0
CA A:CYS84 4.3 144.6 1.0
C A:PRO80 4.5 144.6 1.0
CA A:CYS87 4.5 144.0 1.0
C A:VAL70 4.5 159.9 1.0
CA A:GLY82 4.6 148.2 1.0
N A:CYS87 4.6 144.5 1.0
C A:GLY82 4.8 149.8 1.0
CA A:PRO80 4.8 142.4 1.0
C A:ARG83 4.9 148.2 1.0
C A:CYS84 4.9 145.8 1.0

Zinc binding site 2 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 2 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:148.4
occ:1.00
 SG B:CYS87 2.3 108.7 1.0
SG B:CYS81 2.3 107.7 1.0
SG B:CYS71 2.3 124.5 1.0
SG B:CYS84 2.3 102.8 1.0
N B:CYS81 3.2 94.4 1.0
CB B:CYS81 3.2 103.7 1.0
CB B:CYS71 3.3 115.7 1.0
CB B:CYS84 3.4 93.0 1.0
CB B:CYS87 3.5 88.5 1.0
N B:GLY82 3.7 99.8 1.0
CA B:CYS81 3.7 99.5 1.0
N B:CYS71 3.7 109.0 1.0
CA B:CYS71 4.1 114.6 1.0
C B:CYS81 4.2 103.6 1.0
N B:CYS84 4.2 94.8 1.0
C B:PRO80 4.3 90.4 1.0
N B:ARG83 4.4 95.9 1.0
CA B:CYS84 4.4 90.2 1.0
N B:CYS87 4.5 83.0 1.0
CA B:PRO80 4.6 89.8 1.0
CA B:CYS87 4.6 83.4 1.0
C B:VAL70 4.7 97.3 1.0
CA B:GLY82 4.7 99.5 1.0
C B:ARG83 4.7 100.8 1.0
OG1 B:THR86 4.8 90.8 1.0
CB B:PRO80 4.9 90.2 1.0
C B:GLY82 4.9 96.6 1.0

Zinc binding site 3 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 3 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:154.9
occ:1.00
 SG C:CYS84 2.3 100.3 1.0
SG C:CYS87 2.3 89.6 1.0
SG C:CYS71 2.3 98.6 1.0
SG C:CYS81 2.3 95.7 1.0
CB C:CYS87 3.3 68.7 1.0
CB C:CYS84 3.4 79.0 1.0
CB C:CYS81 3.4 84.0 1.0
N C:CYS81 3.4 73.2 1.0
CB C:CYS71 3.6 80.8 1.0
N C:GLY82 3.7 84.8 1.0
CA C:CYS81 3.9 80.8 1.0
N C:CYS84 3.9 86.7 1.0
N C:CYS71 4.0 80.6 1.0
N C:CYS87 4.1 70.4 1.0
CA C:CYS84 4.2 80.4 1.0
OG1 C:THR86 4.2 79.4 1.0
C C:CYS81 4.3 88.2 1.0
CA C:CYS87 4.3 65.1 1.0
C C:PRO80 4.4 75.6 1.0
N C:ARG83 4.5 84.9 1.0
CA C:CYS71 4.5 80.8 1.0
CA C:PRO80 4.8 73.5 1.0
CA C:GLY82 4.8 79.0 1.0
CB C:PRO80 4.9 76.5 1.0
NH2 C:ARG56 4.9 52.0 1.0
C C:CYS84 4.9 81.6 1.0

Zinc binding site 4 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 4 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn301

b:163.0
occ:1.00
 SG D:CYS84 2.3 103.5 1.0
SG D:CYS87 2.3 80.1 1.0
SG D:CYS81 2.3 109.5 1.0
SG D:CYS71 2.3 106.9 1.0
N D:CYS81 3.3 90.2 1.0
CB D:CYS71 3.3 98.9 1.0
CB D:CYS84 3.4 85.9 1.0
CB D:CYS81 3.4 97.1 1.0
N D:GLY82 3.4 96.4 1.0
CB D:CYS87 3.5 75.8 1.0
CA D:CYS81 3.7 92.6 1.0
N D:CYS71 4.0 94.3 1.0
C D:CYS81 4.0 95.8 1.0
N D:ARG83 4.0 108.8 1.0
N D:CYS84 4.2 92.1 1.0
C D:ARG83 4.2 111.0 1.0
CA D:CYS71 4.3 92.7 1.0
C D:PRO80 4.3 91.7 1.0
CA D:CYS84 4.4 85.2 1.0
CA D:GLY82 4.4 92.9 1.0
O D:ARG83 4.4 109.8 1.0
C D:GLY82 4.6 93.7 1.0
CA D:PRO80 4.7 86.7 1.0
CA D:CYS87 4.7 66.9 1.0
CA D:ARG83 4.8 109.7 1.0
N D:CYS87 4.9 70.0 1.0

Zinc binding site 5 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 5 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn301

b:181.4
occ:1.00
 SG E:CYS84 2.3 109.5 1.0
SG E:CYS87 2.3 93.2 1.0
SG E:CYS81 2.3 121.7 1.0
SG E:CYS71 2.3 110.3 1.0
N E:CYS81 3.1 106.8 1.0
CB E:CYS81 3.3 108.7 1.0
CB E:CYS71 3.5 108.7 1.0
CB E:CYS87 3.6 84.3 1.0
CB E:CYS84 3.7 99.3 1.0
CA E:CYS81 3.7 108.3 1.0
N E:GLY82 3.9 110.7 1.0
N E:CYS71 4.0 109.7 1.0
C E:PRO80 4.1 101.0 1.0
N E:CYS84 4.1 101.2 1.0
CA E:PRO80 4.3 97.0 1.0
C E:CYS81 4.3 111.1 1.0
CA E:CYS71 4.3 109.8 1.0
CA E:CYS84 4.5 100.2 1.0
N E:ARG83 4.6 111.2 1.0
CB E:PRO80 4.7 97.2 1.0
O E:CYS71 4.7 110.7 1.0
CA E:CYS87 4.9 82.4 1.0
C E:CYS71 4.9 110.0 1.0

Zinc binding site 6 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 6 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn301

b:193.4
occ:1.00
 SG F:CYS87 2.3 128.6 1.0
SG F:CYS71 2.3 131.2 1.0
SG F:CYS84 2.3 137.6 1.0
SG F:CYS81 2.3 146.6 1.0
CB F:CYS84 3.1 124.2 1.0
CB F:CYS71 3.4 126.9 1.0
CB F:CYS81 3.4 138.9 1.0
CB F:CYS87 3.5 118.9 1.0
N F:CYS71 3.6 126.0 1.0
N F:CYS81 3.7 139.3 1.0
N F:CYS84 3.8 126.5 1.0
CA F:CYS84 4.0 123.1 1.0
OG1 F:THR86 4.0 115.4 1.0
CA F:CYS71 4.1 126.9 1.0
CA F:CYS81 4.1 140.6 1.0
N F:GLY82 4.1 141.3 1.0
N F:CYS87 4.1 116.6 1.0
CA F:CYS87 4.5 117.2 1.0
C F:CYS84 4.6 123.8 1.0
C F:CYS81 4.6 140.2 1.0
N F:ARG83 4.6 138.8 1.0
C F:VAL70 4.6 116.0 1.0
O F:CYS84 4.8 125.0 1.0
CA F:VAL70 4.8 112.8 1.0
C F:PRO80 4.8 136.7 1.0
NH2 F:ARG56 4.9 94.4 1.0
C F:CYS71 4.9 124.9 1.0
O F:CYS71 4.9 126.4 1.0
C F:ARG83 5.0 139.1 1.0

Zinc binding site 7 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 7 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn701

b:142.2
occ:1.00
 CE1 H:HIS148 2.0 106.3 1.0
ND1 H:HIS64 2.3 109.1 1.0
NE2 H:HIS148 2.7 111.8 1.0
CE1 H:HIS64 3.0 106.5 1.0
OP1 N:A-15 3.1 154.5 1.0
NE2 H:HIS62 3.1 108.6 1.0
ND1 H:HIS148 3.1 105.0 1.0
CD2 H:HIS62 3.2 102.8 1.0
CG H:HIS64 3.4 107.6 1.0
CE1 H:HIS62 3.8 108.8 1.0
CB H:HIS64 3.9 104.9 1.0
CD2 H:HIS148 3.9 109.7 1.0
CG H:HIS62 4.0 95.5 1.0
NE2 H:HIS373 4.1 141.4 1.0
CG H:HIS148 4.2 105.3 1.0
P N:A-15 4.2 160.3 1.0
NE2 H:HIS64 4.2 106.3 1.0
ND1 H:HIS62 4.3 106.3 1.0
CB H:ASP169 4.4 100.2 1.0
CE1 H:HIS373 4.4 141.0 1.0
CD2 H:HIS64 4.4 106.6 1.0
O5' N:A-15 4.6 156.7 1.0
OP2 N:A-15 4.7 153.3 1.0
CB H:HIS62 4.9 92.3 1.0

Zinc binding site 8 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 8 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn301

b:155.9
occ:1.00
 SG J:CYS87 2.3 90.6 1.0
SG J:CYS84 2.3 102.9 1.0
SG J:CYS81 2.3 93.2 1.0
SG J:CYS71 2.3 102.5 1.0
CB J:CYS84 3.2 88.5 1.0
CB J:CYS87 3.2 64.7 1.0
CB J:CYS71 3.4 105.2 1.0
CB J:CYS81 3.5 82.5 1.0
N J:CYS81 3.5 84.6 1.0
N J:GLY82 3.7 96.4 1.0
N J:CYS71 3.9 95.9 1.0
CA J:CYS81 3.9 87.9 1.0
N J:CYS84 4.0 91.3 1.0
CA J:CYS84 4.1 86.2 1.0
N J:CYS87 4.1 65.9 1.0
CA J:CYS87 4.3 60.7 1.0
CA J:CYS71 4.3 100.4 1.0
C J:CYS81 4.3 92.2 1.0
N J:ARG83 4.5 97.3 1.0
OG1 J:THR86 4.5 65.0 1.0
C J:PRO80 4.6 74.3 1.0
CA J:GLY82 4.7 90.7 1.0
C J:CYS84 4.7 85.5 1.0
NH2 J:ARG56 4.9 56.7 1.0
CA J:PRO80 4.9 70.2 1.0
C J:GLY82 4.9 92.1 1.0
C J:ARG83 4.9 101.2 1.0
C J:VAL70 5.0 84.3 1.0

Zinc binding site 9 out of 9 in 8z99

Go back to Zinc Binding Sites List in 8z99
Zinc binding site 9 out of 9 in the Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate- Engaged State +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Zn301

b:226.7
occ:1.00
 O P:CYS81 2.1 193.0 1.0
SG P:CYS87 2.3 179.2 1.0
SG P:CYS71 2.3 184.4 1.0
SG P:CYS84 2.3 187.6 1.0
CB P:CYS87 2.9 176.8 1.0
C P:CYS81 3.1 191.1 1.0
CB P:CYS84 3.2 182.1 1.0
N P:CYS81 3.2 189.8 1.0
N P:CYS84 3.7 182.6 1.0
CA P:CYS81 3.7 190.3 1.0
SG P:CYS81 3.7 188.1 1.0
CB P:CYS71 3.8 182.3 1.0
C P:PRO80 3.9 187.6 1.0
CA P:CYS84 4.0 182.3 1.0
CA P:PRO80 4.1 188.0 1.0
CA P:CYS87 4.2 177.0 1.0
N P:CYS87 4.3 176.6 1.0
N P:GLY82 4.3 181.5 1.0
CB P:CYS81 4.3 189.5 1.0
O P:CYS84 4.5 182.1 1.0
N P:ARG83 4.5 185.4 1.0
C P:CYS84 4.6 182.7 1.0
OG1 P:THR86 4.6 174.3 1.0
CB P:PRO80 4.6 188.2 1.0
N P:CYS71 4.7 181.9 1.0
CA P:GLY82 4.7 180.7 1.0
O P:PRO80 4.7 186.9 1.0
C P:GLY82 4.7 181.4 1.0
CA P:CYS71 4.8 182.7 1.0
C P:ARG83 4.9 186.1 1.0

Reference:

X.Li, Z.Deng, H.Zhang. Cryo-Em Structure of Ntr-Bound Type 7 Crispr-Cas Complex at Substrate-Engaged State +1 To Be Published.
Page generated: Thu Oct 31 14:11:11 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy