Zinc in PDB 8yqt: African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2

Enzymatic activity of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2

All present enzymatic activity of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2:
2.7.7.6;

Other elements in 8yqt:

The structure of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 (pdb code 8yqt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2, PDB code: 8yqt:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 8yqt

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Zinc binding site 1 out of 6 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2002

b:85.0
occ:1.00
 NE2 A:HIS72 2.1 55.4 1.0
SG A:CYS62 2.3 60.8 1.0
SG A:CYS59 2.3 65.1 1.0
SG A:CYS69 2.3 50.0 1.0
CD2 A:HIS72 2.9 52.2 1.0
CB A:CYS59 2.9 60.5 1.0
CE1 A:HIS72 3.2 50.3 1.0
CB A:CYS62 3.5 58.0 1.0
CB A:CYS69 3.5 49.9 1.0
N A:CYS62 3.9 55.7 1.0
CG A:HIS72 4.1 51.7 1.0
ND1 A:HIS72 4.2 51.3 1.0
CA A:CYS62 4.3 57.9 1.0
CA A:CYS69 4.3 43.7 1.0
CA A:GLY51 4.3 61.1 1.0
CA A:CYS59 4.4 61.7 1.0
N A:GLY71 4.6 47.4 1.0
CB A:THR61 4.6 55.2 1.0
N A:MET70 4.8 46.9 1.0
N A:GLY51 4.9 63.3 1.0
C A:CYS69 4.9 49.2 1.0
CA A:GLY71 4.9 41.0 1.0
C A:THR61 4.9 56.5 1.0
C A:CYS62 5.0 60.1 1.0
C A:CYS59 5.0 67.3 1.0

Zinc binding site 2 out of 6 in 8yqt

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Zinc binding site 2 out of 6 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:94.7
occ:1.00
 SG B:CYS1183 2.3 59.9 1.0
SG B:CYS1198 2.3 63.6 1.0
SG B:CYS1180 2.3 47.1 1.0
SG B:CYS1201 2.3 77.7 1.0
CB B:CYS1180 2.9 36.1 1.0
CB B:CYS1198 3.4 64.3 1.0
CB B:CYS1183 3.7 45.7 1.0
CB B:CYS1201 4.0 86.3 1.0
N B:CYS1201 4.2 81.7 1.0
N B:CYS1183 4.2 40.4 1.0
CB B:ASN1200 4.3 66.2 1.0
CA B:CYS1180 4.4 29.8 1.0
CA B:CYS1183 4.6 42.5 1.0
C B:ASN1200 4.7 68.7 1.0
CA B:CYS1201 4.7 86.0 1.0
CA B:ALA1205 4.8 59.4 1.0
CA B:CYS1198 4.8 65.6 1.0
N B:ASN1200 4.9 71.3 1.0
CA B:ASN1200 4.9 69.3 1.0
C B:CYS1180 4.9 41.0 1.0

Zinc binding site 3 out of 6 in 8yqt

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Zinc binding site 3 out of 6 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn101

b:64.5
occ:1.00
 SG H:CYS10 2.3 36.0 1.0
SG H:CYS7 2.3 23.4 1.0
SG H:CYS66 2.3 31.4 1.0
SG H:CYS65 2.3 23.9 1.0
CB H:CYS7 3.1 11.1 1.0
N H:CYS66 3.3 22.9 1.0
CB H:CYS10 3.4 16.7 1.0
CB H:CYS65 3.4 31.6 1.0
CB H:CYS66 3.6 21.8 1.0
CA H:CYS66 3.6 14.3 1.0
N H:CYS10 3.8 13.1 1.0
C H:CYS65 3.8 25.7 1.0
NE H:ARG63 4.0 31.1 1.0
CA H:CYS10 4.2 13.6 1.0
CA H:CYS65 4.2 16.8 1.0
CA H:CYS7 4.5 9.6 1.0
CD H:ARG63 4.6 31.0 1.0
O H:CYS65 4.6 28.4 1.0
CB H:PHE12 4.6 23.2 1.0
N H:GLY11 4.7 16.3 1.0
CB H:THR9 4.7 29.3 1.0
C H:CYS10 4.7 30.8 1.0
CB H:ARG63 4.8 28.2 1.0
N H:CYS65 4.8 22.9 1.0
N H:PHE12 4.8 30.9 1.0
NH2 H:ARG63 4.9 27.3 1.0
C H:THR9 4.9 26.6 1.0
CZ H:ARG63 4.9 32.5 1.0

Zinc binding site 4 out of 6 in 8yqt

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Zinc binding site 4 out of 6 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn201

b:100.8
occ:1.00
 SG G:CYS96 2.3 54.1 1.0
SG G:CYS76 2.3 59.5 1.0
SG G:CYS73 2.3 62.6 1.0
SG G:CYS98 2.3 54.0 1.0
CB G:CYS96 3.2 41.5 1.0
CB G:CYS73 3.3 59.1 1.0
CB G:CYS98 3.3 51.7 1.0
CB G:CYS76 3.4 65.7 1.0
N G:CYS76 3.7 65.5 1.0
N G:CYS98 4.1 49.2 1.0
CA G:CYS76 4.1 69.1 1.0
CB G:TYR100 4.3 49.7 1.0
CA G:CYS98 4.3 49.5 1.0
CA G:CYS96 4.6 38.0 1.0
CB G:ASN75 4.6 72.6 1.0
CA G:CYS73 4.7 56.4 1.0
C G:CYS76 4.8 69.0 1.0
C G:CYS96 4.8 40.9 1.0
CB G:LEU78 4.8 53.3 1.0
N G:ARG97 4.8 49.2 1.0
C G:ASN75 4.8 69.4 1.0
N G:HIS77 4.9 66.7 1.0
N G:TYR100 4.9 50.7 1.0

Zinc binding site 5 out of 6 in 8yqt

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Zinc binding site 5 out of 6 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1301

b:111.2
occ:1.00
 ND1 J:HIS943 2.3 77.1 1.0
SG J:CYS937 2.3 72.9 1.0
SG J:CYS950 2.3 101.5 1.0
CE1 J:HIS943 3.0 74.4 1.0
CB J:CYS953 3.2 92.3 1.0
CB J:CYS950 3.4 97.9 1.0
CG J:HIS943 3.5 78.3 1.0
N J:CYS953 3.5 97.9 1.0
SG J:CYS953 3.6 92.2 1.0
CB J:CYS937 3.6 69.3 1.0
CA J:HIS943 3.9 76.4 1.0
CA J:CYS953 3.9 96.3 1.0
CB J:HIS943 4.0 76.9 1.0
CB J:LYS952 4.1 94.2 1.0
NE2 J:HIS943 4.2 75.8 1.0
C J:LYS952 4.3 95.3 1.0
CA J:CYS937 4.3 71.8 1.0
CD2 J:HIS943 4.4 77.9 1.0
N J:LYS952 4.5 96.1 1.0
CA J:LYS952 4.5 95.8 1.0
N J:ASP944 4.5 89.1 1.0
CD J:PRO938 4.6 73.7 1.0
C J:CYS953 4.8 95.5 1.0
CE J:LYS952 4.8 92.0 1.0
N J:HIS943 4.8 77.8 1.0
C J:HIS943 4.8 78.7 1.0
CA J:CYS950 4.8 98.4 1.0
NZ J:LYS952 5.0 89.5 1.0

Zinc binding site 6 out of 6 in 8yqt

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Zinc binding site 6 out of 6 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1302

b:81.7
occ:1.00
 SG J:CYS901 2.3 62.1 1.0
ND1 J:HIS857 2.3 60.4 1.0
SG J:CYS898 2.3 68.8 1.0
CE1 J:HIS857 3.0 58.0 1.0
CB J:CYS901 3.2 70.9 1.0
N J:CYS901 3.4 66.6 1.0
CB J:CYS898 3.4 59.8 1.0
CG J:HIS857 3.4 55.7 1.0
CA J:HIS857 3.7 57.9 1.0
CA J:CYS901 3.9 65.4 1.0
CB J:HIS857 3.9 54.5 1.0
CB J:ASP851 4.1 63.1 1.0
O J:PRO856 4.1 60.2 1.0
CB J:VAL900 4.1 66.0 1.0
OD2 J:ASP851 4.2 62.4 1.0
NE2 J:HIS857 4.3 56.8 1.0
N J:HIS857 4.3 59.4 1.0
CG J:ASP851 4.4 64.0 1.0
C J:VAL900 4.4 65.2 1.0
CD2 J:HIS857 4.5 57.0 1.0
C J:PRO856 4.5 59.7 1.0
CA J:VAL900 4.6 64.8 1.0
C J:CYS901 4.7 68.9 1.0
N J:VAL900 4.7 67.6 1.0
N J:LYS858 4.8 60.4 1.0
CG1 J:VAL900 4.8 66.2 1.0
O J:LEU855 4.8 65.5 1.0
C J:HIS857 4.8 61.8 1.0
N J:HIS902 4.8 70.7 1.0
CA J:CYS898 4.8 61.9 1.0
CG1 J:VAL903 4.9 64.4 1.0

Reference:

X.Y.Feng, X.Y.Feng. N/A N/A.
Page generated: Wed Nov 13 13:55:43 2024

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