Zinc in PDB 8xld: Structure of the Gfp:Gfp-Nanobody Complex From Biortus.

Protein crystallography data

The structure of Structure of the Gfp:Gfp-Nanobody Complex From Biortus., PDB code: 8xld was solved by F.Wang, W.Cheng, Z.Yuan, D.Lin, C.Bao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.22 / 2.10
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.544, 88.363, 122.842, 90, 90, 90
R / Rfree (%) 16.4 / 21.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Gfp:Gfp-Nanobody Complex From Biortus. (pdb code 8xld). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Gfp:Gfp-Nanobody Complex From Biortus., PDB code: 8xld:

Zinc binding site 1 out of 1 in 8xld

Go back to Zinc Binding Sites List in 8xld
Zinc binding site 1 out of 1 in the Structure of the Gfp:Gfp-Nanobody Complex From Biortus.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Gfp:Gfp-Nanobody Complex From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:28.0
occ:1.00
NE2 A:HIS87 2.0 31.5 1.0
NE2 A:HIS97 2.0 25.1 1.0
OD1 A:ASP85 2.0 28.2 1.0
CG A:ASP85 2.8 28.9 1.0
OD2 A:ASP85 2.9 28.6 1.0
CD2 A:HIS87 2.9 30.0 1.0
CD2 A:HIS97 2.9 24.4 1.0
CE1 A:HIS97 3.0 26.7 1.0
CE1 A:HIS87 3.0 33.7 1.0
ND1 A:HIS97 4.0 27.1 1.0
ND1 A:HIS87 4.1 35.5 1.0
CG A:HIS97 4.1 26.5 1.0
CG A:HIS87 4.1 29.0 1.0
CB A:ASP85 4.2 25.2 1.0
CE A:LYS99 4.2 53.4 1.0
NZ A:LYS99 4.3 59.0 1.0
CA A:ASP85 4.7 24.7 1.0
C A:ASP85 4.7 23.5 1.0
N A:ARG86 4.9 22.3 1.0
O A:HOH487 5.0 39.3 1.0

Reference:

F.Wang, W.Cheng, Z.Yuan, D.Lin, C.Bao. Structure of the Gfp:Gfp-Nanobody Complex From Biortus. To Be Published.
Page generated: Thu Oct 31 13:55:08 2024

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