Zinc in PDB 8wzy: A Novel Amidohydrolase

The structure of A Novel Amidohydrolase, PDB code: 8wzy was solved by R.Feng, D.Ma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.20 / 1.87
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	179.745, 42.002, 43.557, 90, 90, 90
R / Rfree (%)	21.2 / 26

The binding sites of Zinc atom in the A Novel Amidohydrolase (pdb code 8wzy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the A Novel Amidohydrolase, PDB code: 8wzy:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the A Novel Amidohydrolase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A Novel Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn405 b:25.6 occ:1.00 OQ1 A:KCX150 2.1 22.9 1.0 NE2 A:HIS58 2.2 24.2 1.0 NE2 A:HIS56 2.3 22.1 1.0 OD1 A:ASP267 2.3 21.1 1.0 CX A:KCX150 2.9 25.0 1.0 CG A:ASP267 3.1 22.6 1.0 CE1 A:HIS58 3.2 21.3 1.0 CD2 A:HIS56 3.2 22.8 1.0 CD2 A:HIS58 3.2 22.7 1.0 CE1 A:HIS56 3.2 20.4 1.0 OQ2 A:KCX150 3.3 22.4 1.0 OD2 A:ASP267 3.5 24.5 1.0 ZN A:ZN406 3.6 28.9 1.0 O A:HOH603 3.7 36.2 1.0 NZ A:KCX150 4.0 20.4 1.0 ND1 A:HIS58 4.3 24.8 1.0 CB A:ASP267 4.3 19.9 1.0 CG A:HIS58 4.3 21.8 1.0 ND1 A:HIS56 4.3 20.9 1.0 CG A:HIS56 4.4 20.1 1.0 CE1 A:HIS207 4.4 20.0 1.0 CB A:ALA85 4.5 19.6 1.0 NE2 A:HIS207 4.5 20.7 1.0 CA A:ASP267 4.7 20.2 1.0 O A:ALA85 4.8 22.0 1.0

Zinc binding site 2 out of 2 in the A Novel Amidohydrolase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of A Novel Amidohydrolase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn406 b:28.9 occ:1.00 OQ2 A:KCX150 2.0 22.4 1.0 NE2 A:HIS207 2.2 20.7 1.0 ND1 A:HIS184 2.3 23.0 1.0 O A:HOH603 2.8 36.2 1.0 CX A:KCX150 3.0 25.0 1.0 CD2 A:HIS207 3.2 25.4 1.0 CE1 A:HIS184 3.2 25.2 1.0 CE1 A:HIS207 3.2 20.0 1.0 OQ1 A:KCX150 3.2 22.9 1.0 CG A:HIS184 3.3 23.8 1.0 CB A:HIS184 3.5 22.9 1.0 ZN A:ZN405 3.6 25.6 1.0 O A:HOH627 4.0 40.1 1.0 CD A:ARG152 4.1 29.9 1.0 NZ A:KCX150 4.2 20.4 1.0 CE1 A:HIS56 4.3 20.4 1.0 ND1 A:HIS207 4.3 19.4 1.0 CG A:HIS207 4.3 18.4 1.0 NE2 A:HIS184 4.3 26.2 1.0 CD2 A:HIS184 4.4 26.4 1.0 NE2 A:HIS56 4.5 22.1 1.0 OD2 A:ASP267 4.5 24.5 1.0 CG A:ARG152 4.6 26.2 1.0 NH1 A:ARG152 4.7 26.1 1.0 CE A:KCX150 4.8 23.0 1.0 CA A:HIS184 4.9 24.9 1.0

D.Ma, R.Feng. A Novel Amidohydrolase Catalyzes the Degradation of Polyacrylamide By Klebsiella Sp. Pcx To Be Published.