Zinc in PDB 8woy: Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Rbd in Complex with Rabbit ACE2 (Local Refinement)

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Rbd in Complex with Rabbit ACE2 (Local Refinement) (pdb code 8woy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Rbd in Complex with Rabbit ACE2 (Local Refinement), PDB code: 8woy:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Rbd in Complex with Rabbit ACE2 (Local Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Rbd in Complex with Rabbit ACE2 (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:141.7 occ:1.00 OE2 A:GLU402 2.1 79.2 1.0 OE1 A:GLU402 2.1 84.0 1.0 NE2 A:HIS378 2.1 73.8 1.0 NE2 A:HIS374 2.1 66.5 1.0 CD A:GLU402 2.2 82.3 1.0 CE1 A:HIS378 2.5 68.2 1.0 CE1 A:HIS374 2.7 64.7 1.0 CD2 A:HIS374 3.1 59.7 1.0 CD2 A:HIS378 3.4 73.0 1.0 CG A:GLU402 3.4 74.7 1.0 ND1 A:HIS378 3.8 63.5 1.0 ND1 A:HIS374 3.8 69.4 1.0 CA A:GLU402 3.9 63.5 1.0 CG A:HIS374 4.0 63.8 1.0 CB A:GLU402 4.1 68.7 1.0 O A:GLU402 4.2 77.9 1.0 CG A:HIS378 4.2 62.7 1.0 O A:HIS374 4.5 69.6 1.0 O A:HIS401 4.5 65.0 1.0 C A:GLU402 4.6 67.1 1.0 N A:GLU402 4.9 62.5 1.0

L.J.Li, K.Y.Shi, G.H.Yu, G.F.Gao. Structural Basis of Increased Binding Affinities of Spikes From Sars-Cov-2 Omicron Variants to Rabbit-Hare ACE2S Reveals the Expanding Host Tendency To Be Published.