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Zinc in PDB 8uze: Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2

Protein crystallography data

The structure of Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2, PDB code: 8uze was solved by W.Zhang, K.Shi, H.Aihara, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.43 / 3.03
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.142, 118.211, 107.86, 90, 96.14, 90
R / Rfree (%) 21.4 / 26.1

Other elements in 8uze:

The structure of Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2 (pdb code 8uze). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2, PDB code: 8uze:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8uze

Go back to Zinc Binding Sites List in 8uze
Zinc binding site 1 out of 2 in the Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:98.9
occ:1.00
OE2 A:GLU402 2.0 73.4 1.0
NE2 A:HIS378 2.0 85.2 1.0
NE2 A:HIS374 2.0 74.1 1.0
O A:HOH801 2.2 54.8 1.0
CD2 A:HIS374 2.8 72.3 1.0
CD A:GLU402 2.9 78.2 1.0
CE1 A:HIS378 3.0 77.6 1.0
CD2 A:HIS378 3.0 77.0 1.0
CE1 A:HIS374 3.2 74.8 1.0
OE1 A:GLU402 3.3 86.7 1.0
OE2 A:GLU375 3.8 59.3 1.0
CG A:HIS374 4.0 69.2 1.0
ND1 A:HIS378 4.1 68.7 1.0
CG A:HIS378 4.1 65.0 1.0
ND1 A:HIS374 4.2 78.5 1.0
OE1 A:GLU375 4.2 67.4 1.0
CG A:GLU402 4.3 78.6 1.0
CD A:GLU375 4.3 58.8 1.0
O2 A:EDO705 4.5 71.4 1.0
C2 A:EDO705 4.7 63.1 1.0
CA A:GLU402 4.9 69.8 1.0

Zinc binding site 2 out of 2 in 8uze

Go back to Zinc Binding Sites List in 8uze
Zinc binding site 2 out of 2 in the Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn701

b:61.1
occ:1.00
OE2 B:GLU402 2.0 56.6 1.0
NE2 B:HIS378 2.0 52.3 1.0
NE2 B:HIS374 2.1 51.0 1.0
O B:HOH801 2.2 46.8 1.0
CD2 B:HIS374 2.8 50.3 1.0
CD B:GLU402 2.9 58.9 1.0
CD2 B:HIS378 3.0 53.8 1.0
CE1 B:HIS378 3.0 62.6 1.0
OE1 B:GLU402 3.1 74.2 1.0
CE1 B:HIS374 3.2 56.4 1.0
OE2 B:GLU375 4.0 44.8 1.0
CG B:HIS374 4.0 43.7 1.0
ND1 B:HIS378 4.1 54.5 1.0
CG B:HIS378 4.1 47.7 1.0
ND1 B:HIS374 4.2 53.7 1.0
CG B:GLU402 4.3 41.2 1.0
OE1 B:GLU375 4.3 50.9 1.0
CD B:GLU375 4.4 48.6 1.0
CA B:GLU402 5.0 58.4 1.0

Reference:

W.Zhang, K.Shi, H.Aihara, F.Li. Crystal Structure of Chimeric Rbd Complexed with Chimeric Mouse ACE2 To Be Published.
Page generated: Thu Oct 31 12:35:53 2024

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