Zinc in PDB 8tz0: Structure of A Bacterial E1-E2-Ubl Complex (Form 1)

The structure of Structure of A Bacterial E1-E2-Ubl Complex (Form 1), PDB code: 8tz0 was solved by Q.Ye, L.R.Chambers, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	74.01 / 2.47
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.851, 89.659, 131.601, 90, 94.92, 90
R / Rfree (%)	19.6 / 24.4

The binding sites of Zinc atom in the Structure of A Bacterial E1-E2-Ubl Complex (Form 1) (pdb code 8tz0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of A Bacterial E1-E2-Ubl Complex (Form 1), PDB code: 8tz0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of A Bacterial E1-E2-Ubl Complex (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Bacterial E1-E2-Ubl Complex (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:47.1 occ:1.00 SG A:CYS493 2.3 49.7 1.0 SG A:CYS340 2.3 44.9 1.0 SG A:CYS343 2.3 49.4 1.0 SG A:CYS491 2.3 52.0 1.0 H A:CYS343 2.9 57.4 1.0 H A:CYS340 3.0 62.3 1.0 HB3 A:CYS493 3.0 54.8 1.0 H A:CYS493 3.1 57.2 1.0 HB3 A:CYS491 3.2 56.1 1.0 CB A:CYS493 3.3 45.6 1.0 N A:CYS343 3.4 47.9 1.0 CB A:CYS491 3.4 46.8 1.0 HB3 A:CYS340 3.5 53.1 1.0 CB A:CYS340 3.5 44.3 1.0 CB A:CYS343 3.5 50.3 1.0 HB3 A:CYS342 3.5 61.9 1.0 HA A:CYS343 3.7 57.9 1.0 CA A:CYS343 3.8 48.2 1.0 N A:CYS340 3.8 51.9 1.0 HB2 A:CYS343 3.8 60.4 1.0 N A:CYS493 3.8 47.7 1.0 HB2 A:CYS491 3.9 56.1 1.0 HB2 A:CYS493 4.0 54.8 1.0 CA A:CYS340 4.1 47.4 1.0 CA A:CYS493 4.1 48.6 1.0 HB3 A:ASP486 4.2 56.2 1.0 H A:ASP486 4.2 57.6 1.0 HB2 A:CYS340 4.3 53.1 1.0 C A:CYS342 4.3 45.1 1.0 HB3 A:CYS343 4.3 60.4 1.0 HB2 A:ASP486 4.3 56.2 1.0 O A:CYS340 4.4 46.6 1.0 C A:CYS340 4.5 43.4 1.0 CB A:CYS342 4.5 51.6 1.0 H A:CYS342 4.5 53.7 1.0 HA A:ALA339 4.6 57.8 1.0 HG2 A:LYS485 4.6 67.6 1.0 CA A:CYS491 4.6 50.9 1.0 H A:ILE492 4.6 56.2 1.0 HG13 A:ILE492 4.6 50.7 1.0 C A:CYS491 4.7 47.7 1.0 CB A:ASP486 4.7 46.8 1.0 N A:ILE492 4.7 46.9 1.0 CA A:CYS342 4.8 43.1 1.0 HE3 A:LYS485 4.8 67.0 1.0 N A:CYS342 4.8 44.7 1.0 HA A:CYS493 4.8 58.3 1.0 HA A:CYS491 4.9 61.1 1.0 C A:ALA339 5.0 50.1 1.0 N A:ASP486 5.0 48.0 1.0 HA A:CYS340 5.0 56.9 1.0

Zinc binding site 2 out of 2 in the Structure of A Bacterial E1-E2-Ubl Complex (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Bacterial E1-E2-Ubl Complex (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn601 b:68.0 occ:1.00 SG B:CYS493 2.3 74.7 1.0 SG B:CYS340 2.3 63.9 1.0 SG B:CYS343 2.3 66.7 1.0 SG B:CYS491 2.4 66.8 1.0 HB3 B:CYS493 2.7 75.2 1.0 H B:CYS343 2.9 75.1 1.0 CB B:CYS493 3.1 62.7 1.0 H B:CYS340 3.1 76.2 1.0 HB3 B:CYS340 3.1 70.3 1.0 H B:CYS493 3.2 85.6 1.0 HB3 B:CYS491 3.2 83.8 1.0 CB B:CYS340 3.3 58.6 1.0 HG B:CYS491 3.4 80.2 1.0 N B:CYS343 3.4 62.6 1.0 CB B:CYS491 3.4 69.8 1.0 CB B:CYS343 3.5 68.3 1.0 HB3 B:CYS342 3.7 79.9 1.0 HA B:CYS343 3.7 79.9 1.0 HB2 B:CYS493 3.8 75.2 1.0 CA B:CYS343 3.8 66.6 1.0 N B:CYS340 3.8 63.5 1.0 HB2 B:CYS343 3.8 82.0 1.0 N B:CYS493 3.9 71.3 1.0 HB2 B:CYS491 3.9 83.8 1.0 CA B:CYS340 4.0 65.0 1.0 CA B:CYS493 4.1 69.7 1.0 HB2 B:CYS340 4.1 70.3 1.0 H B:ASP486 4.2 85.6 1.0 HB3 B:ASP486 4.3 84.2 1.0 HB3 B:CYS343 4.3 82.0 1.0 O B:CYS340 4.3 62.4 1.0 HB2 B:ASP486 4.4 84.2 1.0 C B:CYS342 4.4 62.5 1.0 C B:CYS340 4.4 62.6 1.0 H B:CYS342 4.6 73.9 1.0 HG2 B:LYS485 4.6 93.6 1.0 CB B:CYS342 4.6 66.6 1.0 HA B:ALA339 4.6 89.3 1.0 CA B:CYS491 4.7 71.0 1.0 C B:CYS491 4.7 70.9 1.0 HE3 B:LYS485 4.8 80.9 1.0 CB B:ASP486 4.8 70.2 1.0 HA B:CYS493 4.8 83.6 1.0 CA B:CYS342 4.8 62.0 1.0 HG12 B:ILE492 4.8 75.4 1.0 N B:CYS342 4.9 61.6 1.0 N B:ILE492 4.9 67.8 1.0 H B:ILE492 4.9 81.3 1.0 HA B:CYS340 4.9 78.1 1.0 C B:CYS493 4.9 66.9 1.0 N B:ASP486 4.9 71.4 1.0 C B:ALA339 5.0 65.2 1.0 HA B:LYS485 5.0 91.9 1.0 HA B:CYS491 5.0 85.2 1.0 HG13 B:ILE492 5.0 75.4 1.0

L.R.Chambers, Q.Ye, M.Gong, K.D.Corbett. Bacteria Encode Eukaryotic-Like Ubiquitination Pathways That Function in Antiviral Defense To Be Published.