Zinc in PDB 8tyx: Structure of A Bacterial Ubl-Deubiquitinase Complex (Form 1)

The structure of Structure of A Bacterial Ubl-Deubiquitinase Complex (Form 1), PDB code: 8tyx was solved by Q.Ye, M.Gong, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.85 / 1.36
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	53.338, 64.69, 141.691, 90, 90, 90
R / Rfree (%)	15.3 / 18

The binding sites of Zinc atom in the Structure of A Bacterial Ubl-Deubiquitinase Complex (Form 1) (pdb code 8tyx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of A Bacterial Ubl-Deubiquitinase Complex (Form 1), PDB code: 8tyx:

Zinc binding site 1 out of 1 in the Structure of A Bacterial Ubl-Deubiquitinase Complex (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Bacterial Ubl-Deubiquitinase Complex (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:14.4 occ:1.00 OD2 B:ASP106 2.0 10.9 1.0 NE2 B:HIS94 2.1 11.5 1.0 NE2 B:HIS96 2.1 13.8 1.0 CG B:ASP106 2.6 11.6 1.0 OD1 B:ASP106 2.7 13.2 1.0 H A:GLY97 2.8 30.3 1.0 CD2 B:HIS96 2.9 12.3 1.0 CE1 B:HIS94 3.0 10.3 1.0 HD2 B:HIS96 3.0 14.7 1.0 C A:GLY97 3.1 32.1 1.0 CD2 B:HIS94 3.2 10.9 1.0 CE1 B:HIS96 3.2 14.8 1.0 HE1 B:HIS94 3.2 12.3 1.0 HD2 B:HIS94 3.4 13.1 1.0 HE1 B:HIS96 3.4 17.8 1.0 HA2 A:GLY97 3.4 35.5 1.0 N A:GLY97 3.5 25.2 1.0 CA A:GLY97 3.5 29.6 1.0 H B:SER103 3.6 15.7 1.0 HG B:SER103 3.8 16.7 1.0 OG B:SER103 4.0 13.9 1.0 O B:TYR101 4.0 13.9 1.0 HB1 A:ALA96 4.0 21.1 1.0 HB3 B:SER103 4.0 18.1 1.0 O A:GLY97 4.0 35.1 1.0 HG11 B:VAL121 4.0 15.1 1.0 HG13 B:VAL121 4.1 15.1 1.0 CB B:ASP106 4.1 12.2 1.0 CG B:HIS96 4.1 13.3 1.0 ND1 B:HIS94 4.2 11.1 1.0 ND1 B:HIS96 4.2 13.3 1.0 CG B:HIS94 4.3 12.5 1.0 O B:HOH450 4.3 33.8 1.0 HA B:HIS102 4.3 15.8 1.0 HG21 B:VAL121 4.4 15.9 1.0 HB2 B:ASP106 4.4 14.6 1.0 HB3 B:ASP106 4.4 14.6 1.0 N B:SER103 4.5 13.1 1.0 HA3 A:GLY97 4.5 35.5 1.0 CB B:SER103 4.5 15.1 1.0 CG1 B:VAL121 4.5 12.6 1.0 C A:ALA96 4.6 20.1 1.0 HG22 B:VAL121 4.7 15.9 1.0 H B:ASP106 4.9 14.5 1.0 CB A:ALA96 4.9 17.6 1.0 HD1 B:HIS94 4.9 13.4 1.0 HA A:ALA96 4.9 19.2 1.0 CG2 B:VAL121 5.0 13.2 1.0 HD1 B:HIS96 5.0 16.0 1.0

L.R.Chambers, Q.Ye, M.Gong, K.D.Corbett. Bacteria Encode Eukaryotic-Like Ubiquitination Pathways That Function in Antiviral Defense To Be Published.