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Zinc in PDB 8th9: Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna

Enzymatic activity of Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna

All present enzymatic activity of Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna:
4.2.99.18;

Protein crystallography data

The structure of Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna, PDB code: 8th9 was solved by B.E.Eckenroth, S.Doublie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.40 / 2.08
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 121.43, 121.43, 117.695, 90, 90, 90
R / Rfree (%) 22.2 / 24.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna (pdb code 8th9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna, PDB code: 8th9:

Zinc binding site 1 out of 1 in 8th9

Go back to Zinc Binding Sites List in 8th9
Zinc binding site 1 out of 1 in the Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Mammalian NEIL2 From Monodelphis Domestica in Complex with Thf-Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:70.4
occ:1.00
 ND1 A:HIS298 2.0 70.0 1.0
SG A:CYS321 2.3 74.5 1.0
SG A:CYS318 2.3 66.0 1.0
SG A:CYS294 2.4 77.0 1.0
CE1 A:HIS298 2.9 63.9 1.0
CG A:HIS298 3.1 69.7 1.0
CB A:CYS318 3.4 54.6 1.0
CB A:HIS298 3.5 67.3 1.0
CB A:CYS321 3.5 68.8 1.0
CB A:CYS294 3.5 60.7 1.0
N A:CYS321 3.8 56.2 1.0
CB A:ALA296 4.0 74.8 1.0
NE2 A:HIS298 4.0 65.6 1.0
CD2 A:HIS298 4.1 65.4 1.0
CA A:CYS321 4.2 64.2 1.0
CB A:HIS320 4.3 67.0 1.0
N A:HIS298 4.6 79.5 1.0
CA A:HIS298 4.6 66.0 1.0
C A:HIS320 4.7 61.9 1.0
CA A:CYS318 4.8 57.0 1.0
N A:ALA296 4.9 79.9 1.0
CA A:CYS294 4.9 64.5 1.0
CA A:HIS320 4.9 59.5 1.0
CA A:ALA296 5.0 82.7 1.0

Reference:

B.E.Eckenroth, J.D.Bumgarner, O.Matsumoto-Elliott, S.S.David, S.Doublie. Structural and Biochemical Insights Into NEIL2'S Preference For Abasic Sites To Be Published.
Page generated: Thu Dec 28 13:42:17 2023

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