Zinc in PDB 8t3t: Structure of BRE1-Nucleosome Complex - STATE3
Enzymatic activity of Structure of BRE1-Nucleosome Complex - STATE3
All present enzymatic activity of Structure of BRE1-Nucleosome Complex - STATE3:
2.3.2.27;
Zinc Binding Sites:
The binding sites of Zinc atom in the Structure of BRE1-Nucleosome Complex - STATE3
(pdb code 8t3t). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Structure of BRE1-Nucleosome Complex - STATE3, PDB code: 8t3t:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 8t3t
Go back to
Zinc Binding Sites List in 8t3t
Zinc binding site 1 out
of 4 in the Structure of BRE1-Nucleosome Complex - STATE3
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Zn801
b:290.0
occ:1.00
|
ND1
|
K:HIS665
|
2.1
|
233.6
|
1.0
|
SG
|
K:CYS683
|
2.3
|
249.6
|
1.0
|
SG
|
K:CYS686
|
2.3
|
253.9
|
1.0
|
SG
|
K:CYS663
|
2.3
|
227.9
|
1.0
|
CE1
|
K:HIS665
|
2.3
|
232.9
|
1.0
|
OG1
|
K:THR685
|
2.8
|
248.4
|
1.0
|
CB
|
K:CYS663
|
3.0
|
224.7
|
1.0
|
CG
|
K:HIS665
|
3.3
|
232.2
|
1.0
|
CB
|
K:CYS686
|
3.3
|
250.7
|
1.0
|
N
|
K:CYS686
|
3.4
|
250.8
|
1.0
|
NE2
|
K:HIS665
|
3.5
|
231.8
|
1.0
|
CB
|
K:CYS683
|
3.6
|
247.1
|
1.0
|
CA
|
K:CYS686
|
3.8
|
250.4
|
1.0
|
CD2
|
K:HIS665
|
3.9
|
231.4
|
1.0
|
CB
|
K:HIS665
|
4.1
|
232.1
|
1.0
|
CB
|
K:THR685
|
4.1
|
247.2
|
1.0
|
C
|
K:CYS686
|
4.4
|
250.4
|
1.0
|
C
|
K:THR685
|
4.4
|
247.3
|
1.0
|
CA
|
K:CYS663
|
4.5
|
223.8
|
1.0
|
CA
|
K:THR685
|
4.6
|
247.4
|
1.0
|
N
|
K:THR685
|
4.7
|
247.5
|
1.0
|
N
|
K:ASN687
|
4.8
|
243.4
|
1.0
|
O
|
K:CYS686
|
4.8
|
250.6
|
1.0
|
CA
|
K:CYS683
|
4.9
|
246.6
|
1.0
|
C
|
K:CYS663
|
5.0
|
224.2
|
1.0
|
CB
|
K:LYS688
|
5.0
|
238.3
|
1.0
|
|
Zinc binding site 2 out
of 4 in 8t3t
Go back to
Zinc Binding Sites List in 8t3t
Zinc binding site 2 out
of 4 in the Structure of BRE1-Nucleosome Complex - STATE3
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Zn802
b:304.9
occ:1.00
|
SG
|
K:CYS668
|
2.3
|
267.3
|
1.0
|
SG
|
K:CYS651
|
2.3
|
289.3
|
1.0
|
SG
|
K:CYS648
|
2.3
|
280.7
|
1.0
|
SG
|
K:CYS671
|
2.3
|
266.6
|
1.0
|
CB
|
K:CYS651
|
2.6
|
286.7
|
1.0
|
CB
|
K:CYS648
|
3.0
|
280.7
|
1.0
|
CB
|
K:CYS668
|
3.2
|
265.0
|
1.0
|
CB
|
K:CYS671
|
3.4
|
266.0
|
1.0
|
N
|
K:CYS651
|
3.6
|
286.5
|
1.0
|
CA
|
K:CYS651
|
3.7
|
286.7
|
1.0
|
ND2
|
K:ASN654
|
3.8
|
277.5
|
1.0
|
N
|
K:CYS668
|
4.0
|
264.3
|
1.0
|
CA
|
K:CYS668
|
4.1
|
264.4
|
1.0
|
N
|
K:CYS671
|
4.2
|
266.3
|
1.0
|
CA
|
K:CYS671
|
4.4
|
266.0
|
1.0
|
CA
|
K:CYS648
|
4.5
|
280.5
|
1.0
|
C
|
K:CYS651
|
4.6
|
287.1
|
1.0
|
C
|
K:CYS668
|
4.7
|
264.9
|
1.0
|
CB
|
K:ASN654
|
4.7
|
277.6
|
1.0
|
O
|
K:CYS668
|
4.7
|
265.2
|
1.0
|
CG
|
K:ASN654
|
4.7
|
277.2
|
1.0
|
N
|
K:SER652
|
4.8
|
285.4
|
1.0
|
C
|
K:CYS648
|
4.9
|
280.6
|
1.0
|
C
|
K:LEU650
|
4.9
|
274.9
|
1.0
|
O
|
K:ASN654
|
4.9
|
277.8
|
1.0
|
|
Zinc binding site 3 out
of 4 in 8t3t
Go back to
Zinc Binding Sites List in 8t3t
Zinc binding site 3 out
of 4 in the Structure of BRE1-Nucleosome Complex - STATE3
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn801
b:198.1
occ:1.00
|
ND1
|
L:HIS665
|
2.1
|
156.6
|
1.0
|
SG
|
L:CYS683
|
2.3
|
136.6
|
1.0
|
SG
|
L:CYS686
|
2.3
|
148.2
|
1.0
|
SG
|
L:CYS663
|
2.3
|
160.3
|
1.0
|
CE1
|
L:HIS665
|
2.6
|
154.6
|
1.0
|
CB
|
L:CYS663
|
2.7
|
153.5
|
1.0
|
CB
|
L:CYS686
|
2.9
|
144.9
|
1.0
|
CB
|
L:CYS683
|
3.2
|
133.4
|
1.0
|
CG
|
L:HIS665
|
3.3
|
153.1
|
1.0
|
OG1
|
L:THR685
|
3.5
|
140.9
|
1.0
|
N
|
L:CYS686
|
3.6
|
143.8
|
1.0
|
NE2
|
L:HIS665
|
3.8
|
152.4
|
1.0
|
CA
|
L:CYS686
|
3.8
|
143.4
|
1.0
|
CB
|
L:HIS665
|
4.0
|
152.8
|
1.0
|
CD2
|
L:HIS665
|
4.2
|
151.9
|
1.0
|
CA
|
L:CYS663
|
4.2
|
153.1
|
1.0
|
NZ
|
L:LYS688
|
4.4
|
134.5
|
1.0
|
C
|
L:CYS686
|
4.5
|
143.0
|
1.0
|
N
|
L:ASN687
|
4.6
|
137.0
|
1.0
|
CA
|
L:CYS683
|
4.6
|
132.0
|
1.0
|
C
|
L:CYS663
|
4.7
|
153.2
|
1.0
|
C
|
L:THR685
|
4.8
|
139.9
|
1.0
|
CB
|
L:THR685
|
4.9
|
139.8
|
1.0
|
N
|
L:HIS665
|
4.9
|
154.1
|
1.0
|
O
|
L:CYS663
|
5.0
|
154.0
|
1.0
|
N
|
L:CYS663
|
5.0
|
153.7
|
1.0
|
|
Zinc binding site 4 out
of 4 in 8t3t
Go back to
Zinc Binding Sites List in 8t3t
Zinc binding site 4 out
of 4 in the Structure of BRE1-Nucleosome Complex - STATE3
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn802
b:219.9
occ:1.00
|
SG
|
L:CYS668
|
2.3
|
167.5
|
1.0
|
SG
|
L:CYS651
|
2.3
|
193.1
|
1.0
|
SG
|
L:CYS648
|
2.3
|
193.2
|
1.0
|
SG
|
L:CYS671
|
2.3
|
157.0
|
1.0
|
CB
|
L:CYS651
|
2.8
|
191.9
|
1.0
|
CB
|
L:CYS648
|
3.2
|
191.5
|
1.0
|
N
|
L:CYS651
|
3.2
|
192.6
|
1.0
|
CB
|
L:CYS668
|
3.4
|
166.0
|
1.0
|
CB
|
L:CYS671
|
3.5
|
151.0
|
1.0
|
CA
|
L:CYS651
|
3.6
|
192.1
|
1.0
|
N
|
L:CYS671
|
4.1
|
151.2
|
1.0
|
CB
|
L:LEU650
|
4.2
|
179.2
|
1.0
|
C
|
L:LEU650
|
4.3
|
179.8
|
1.0
|
N
|
L:CYS668
|
4.4
|
165.7
|
1.0
|
CA
|
L:CYS671
|
4.4
|
150.2
|
1.0
|
CA
|
L:CYS668
|
4.4
|
165.9
|
1.0
|
C
|
L:CYS651
|
4.5
|
193.1
|
1.0
|
CA
|
L:LEU650
|
4.6
|
179.7
|
1.0
|
N
|
L:LEU650
|
4.6
|
180.0
|
1.0
|
CA
|
L:CYS648
|
4.6
|
192.2
|
1.0
|
N
|
L:SER652
|
4.6
|
196.7
|
1.0
|
O
|
L:CYS668
|
4.8
|
167.1
|
1.0
|
C
|
L:CYS668
|
4.9
|
165.6
|
1.0
|
C
|
L:CYS648
|
5.0
|
191.9
|
1.0
|
|
Reference:
F.Zhao,
C.W.Hicks,
C.Wolberger.
Structure of BRE1-Nucleosome Complex in State 3 To Be Published.
Page generated: Thu Oct 31 11:25:14 2024
|