Zinc in PDB 8t3t: Structure of BRE1-Nucleosome Complex - STATE3

Enzymatic activity of Structure of BRE1-Nucleosome Complex - STATE3

All present enzymatic activity of Structure of BRE1-Nucleosome Complex - STATE3:
2.3.2.27;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of BRE1-Nucleosome Complex - STATE3 (pdb code 8t3t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of BRE1-Nucleosome Complex - STATE3, PDB code: 8t3t:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 8t3t

Go back to Zinc Binding Sites List in 8t3t
Zinc binding site 1 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn801

b:290.0
occ:1.00
 ND1 K:HIS665 2.1 233.6 1.0
SG K:CYS683 2.3 249.6 1.0
SG K:CYS686 2.3 253.9 1.0
SG K:CYS663 2.3 227.9 1.0
CE1 K:HIS665 2.3 232.9 1.0
OG1 K:THR685 2.8 248.4 1.0
CB K:CYS663 3.0 224.7 1.0
CG K:HIS665 3.3 232.2 1.0
CB K:CYS686 3.3 250.7 1.0
N K:CYS686 3.4 250.8 1.0
NE2 K:HIS665 3.5 231.8 1.0
CB K:CYS683 3.6 247.1 1.0
CA K:CYS686 3.8 250.4 1.0
CD2 K:HIS665 3.9 231.4 1.0
CB K:HIS665 4.1 232.1 1.0
CB K:THR685 4.1 247.2 1.0
C K:CYS686 4.4 250.4 1.0
C K:THR685 4.4 247.3 1.0
CA K:CYS663 4.5 223.8 1.0
CA K:THR685 4.6 247.4 1.0
N K:THR685 4.7 247.5 1.0
N K:ASN687 4.8 243.4 1.0
O K:CYS686 4.8 250.6 1.0
CA K:CYS683 4.9 246.6 1.0
C K:CYS663 5.0 224.2 1.0
CB K:LYS688 5.0 238.3 1.0

Zinc binding site 2 out of 4 in 8t3t

Go back to Zinc Binding Sites List in 8t3t
Zinc binding site 2 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn802

b:304.9
occ:1.00
 SG K:CYS668 2.3 267.3 1.0
SG K:CYS651 2.3 289.3 1.0
SG K:CYS648 2.3 280.7 1.0
SG K:CYS671 2.3 266.6 1.0
CB K:CYS651 2.6 286.7 1.0
CB K:CYS648 3.0 280.7 1.0
CB K:CYS668 3.2 265.0 1.0
CB K:CYS671 3.4 266.0 1.0
N K:CYS651 3.6 286.5 1.0
CA K:CYS651 3.7 286.7 1.0
ND2 K:ASN654 3.8 277.5 1.0
N K:CYS668 4.0 264.3 1.0
CA K:CYS668 4.1 264.4 1.0
N K:CYS671 4.2 266.3 1.0
CA K:CYS671 4.4 266.0 1.0
CA K:CYS648 4.5 280.5 1.0
C K:CYS651 4.6 287.1 1.0
C K:CYS668 4.7 264.9 1.0
CB K:ASN654 4.7 277.6 1.0
O K:CYS668 4.7 265.2 1.0
CG K:ASN654 4.7 277.2 1.0
N K:SER652 4.8 285.4 1.0
C K:CYS648 4.9 280.6 1.0
C K:LEU650 4.9 274.9 1.0
O K:ASN654 4.9 277.8 1.0

Zinc binding site 3 out of 4 in 8t3t

Go back to Zinc Binding Sites List in 8t3t
Zinc binding site 3 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn801

b:198.1
occ:1.00
 ND1 L:HIS665 2.1 156.6 1.0
SG L:CYS683 2.3 136.6 1.0
SG L:CYS686 2.3 148.2 1.0
SG L:CYS663 2.3 160.3 1.0
CE1 L:HIS665 2.6 154.6 1.0
CB L:CYS663 2.7 153.5 1.0
CB L:CYS686 2.9 144.9 1.0
CB L:CYS683 3.2 133.4 1.0
CG L:HIS665 3.3 153.1 1.0
OG1 L:THR685 3.5 140.9 1.0
N L:CYS686 3.6 143.8 1.0
NE2 L:HIS665 3.8 152.4 1.0
CA L:CYS686 3.8 143.4 1.0
CB L:HIS665 4.0 152.8 1.0
CD2 L:HIS665 4.2 151.9 1.0
CA L:CYS663 4.2 153.1 1.0
NZ L:LYS688 4.4 134.5 1.0
C L:CYS686 4.5 143.0 1.0
N L:ASN687 4.6 137.0 1.0
CA L:CYS683 4.6 132.0 1.0
C L:CYS663 4.7 153.2 1.0
C L:THR685 4.8 139.9 1.0
CB L:THR685 4.9 139.8 1.0
N L:HIS665 4.9 154.1 1.0
O L:CYS663 5.0 154.0 1.0
N L:CYS663 5.0 153.7 1.0

Zinc binding site 4 out of 4 in 8t3t

Go back to Zinc Binding Sites List in 8t3t
Zinc binding site 4 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of BRE1-Nucleosome Complex - STATE3 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn802

b:219.9
occ:1.00
 SG L:CYS668 2.3 167.5 1.0
SG L:CYS651 2.3 193.1 1.0
SG L:CYS648 2.3 193.2 1.0
SG L:CYS671 2.3 157.0 1.0
CB L:CYS651 2.8 191.9 1.0
CB L:CYS648 3.2 191.5 1.0
N L:CYS651 3.2 192.6 1.0
CB L:CYS668 3.4 166.0 1.0
CB L:CYS671 3.5 151.0 1.0
CA L:CYS651 3.6 192.1 1.0
N L:CYS671 4.1 151.2 1.0
CB L:LEU650 4.2 179.2 1.0
C L:LEU650 4.3 179.8 1.0
N L:CYS668 4.4 165.7 1.0
CA L:CYS671 4.4 150.2 1.0
CA L:CYS668 4.4 165.9 1.0
C L:CYS651 4.5 193.1 1.0
CA L:LEU650 4.6 179.7 1.0
N L:LEU650 4.6 180.0 1.0
CA L:CYS648 4.6 192.2 1.0
N L:SER652 4.6 196.7 1.0
O L:CYS668 4.8 167.1 1.0
C L:CYS668 4.9 165.6 1.0
C L:CYS648 5.0 191.9 1.0

Reference:

F.Zhao, C.W.Hicks, C.Wolberger. Structure of BRE1-Nucleosome Complex in State 3 To Be Published.
Page generated: Thu Oct 31 11:25:14 2024

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