Zinc in PDB 8sst: Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
Protein crystallography data
The structure of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER, PDB code: 8sst
was solved by
J.R.Horton,
J.Yang,
X.Cheng,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.17 /
2.19
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
160.561,
41.596,
135.215,
90,
105.61,
90
|
R / Rfree (%)
|
22 /
24.3
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Zinc atom in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
(pdb code 8sst). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 14 binding sites of Zinc where determined in the
Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER, PDB code: 8sst:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 14 in 8sst
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Zinc Binding Sites List in 8sst
Zinc binding site 1 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_01.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn501
b:207.4
occ:1.00
|
NE2
|
A:HIS288
|
2.0
|
178.8
|
1.0
|
NE2
|
A:HIS284
|
2.0
|
206.8
|
1.0
|
SG
|
A:CYS268
|
2.2
|
204.8
|
1.0
|
SG
|
A:CYS271
|
2.3
|
217.3
|
1.0
|
CE1
|
A:HIS288
|
2.5
|
175.4
|
1.0
|
CD2
|
A:HIS284
|
2.6
|
202.7
|
1.0
|
CE1
|
A:HIS284
|
3.1
|
203.0
|
1.0
|
CD2
|
A:HIS288
|
3.3
|
176.7
|
1.0
|
CB
|
A:CYS268
|
3.5
|
191.2
|
1.0
|
N
|
A:CYS271
|
3.7
|
203.5
|
1.0
|
ND1
|
A:HIS288
|
3.7
|
173.3
|
1.0
|
CB
|
A:CYS271
|
3.7
|
209.5
|
1.0
|
CG
|
A:HIS284
|
3.8
|
198.7
|
1.0
|
ND1
|
A:HIS284
|
4.0
|
200.0
|
1.0
|
CB
|
A:TYR273
|
4.0
|
212.2
|
1.0
|
CA
|
A:CYS271
|
4.1
|
209.6
|
1.0
|
CG
|
A:HIS288
|
4.2
|
172.1
|
1.0
|
N
|
A:TYR273
|
4.2
|
214.0
|
1.0
|
N
|
A:SER272
|
4.4
|
207.0
|
1.0
|
C
|
A:CYS271
|
4.4
|
215.6
|
1.0
|
CB
|
A:LEU270
|
4.6
|
180.3
|
1.0
|
C
|
A:LEU270
|
4.8
|
193.5
|
1.0
|
CA
|
A:TYR273
|
4.8
|
216.0
|
1.0
|
N
|
A:LEU270
|
4.8
|
190.3
|
1.0
|
CA
|
A:CYS268
|
4.8
|
192.6
|
1.0
|
O
|
A:HIS284
|
4.9
|
186.4
|
1.0
|
CA
|
A:LEU270
|
5.0
|
187.8
|
1.0
|
|
Zinc binding site 2 out
of 14 in 8sst
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Zinc Binding Sites List in 8sst
Zinc binding site 2 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_02.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn502
b:78.6
occ:1.00
|
NE2
|
A:HIS316
|
2.0
|
65.2
|
1.0
|
NE2
|
A:HIS312
|
2.0
|
73.9
|
1.0
|
SG
|
A:CYS299
|
2.2
|
82.5
|
1.0
|
SG
|
A:CYS296
|
2.3
|
81.9
|
1.0
|
CD2
|
A:HIS312
|
2.8
|
73.3
|
1.0
|
CD2
|
A:HIS316
|
3.0
|
70.2
|
1.0
|
CE1
|
A:HIS316
|
3.0
|
71.4
|
1.0
|
CE1
|
A:HIS312
|
3.2
|
69.5
|
1.0
|
CB
|
A:CYS296
|
3.4
|
89.0
|
1.0
|
CB
|
A:CYS299
|
3.5
|
84.1
|
1.0
|
N
|
A:CYS299
|
3.6
|
84.7
|
1.0
|
CG
|
A:HIS312
|
4.0
|
72.6
|
1.0
|
CA
|
A:CYS299
|
4.1
|
86.1
|
1.0
|
ND1
|
A:HIS316
|
4.1
|
72.7
|
1.0
|
CG
|
A:HIS316
|
4.1
|
69.9
|
1.0
|
ND1
|
A:HIS312
|
4.2
|
67.6
|
1.0
|
CB
|
A:LEU298
|
4.2
|
76.8
|
1.0
|
C
|
A:LEU298
|
4.6
|
83.3
|
1.0
|
C
|
A:CYS299
|
4.7
|
92.5
|
1.0
|
CA
|
A:LEU298
|
4.8
|
84.7
|
1.0
|
CA
|
A:CYS296
|
4.8
|
90.1
|
1.0
|
N
|
A:LEU298
|
4.9
|
89.2
|
1.0
|
O
|
A:CYS299
|
4.9
|
95.4
|
1.0
|
|
Zinc binding site 3 out
of 14 in 8sst
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Zinc Binding Sites List in 8sst
Zinc binding site 3 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_03.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn503
b:67.0
occ:1.00
|
NE2
|
A:HIS345
|
2.0
|
84.4
|
1.0
|
NE2
|
A:HIS340
|
2.0
|
67.4
|
1.0
|
SG
|
A:CYS327
|
2.3
|
78.1
|
1.0
|
SG
|
A:CYS324
|
2.3
|
79.2
|
1.0
|
CD2
|
A:HIS340
|
2.9
|
65.9
|
1.0
|
CE1
|
A:HIS345
|
3.0
|
77.0
|
1.0
|
CD2
|
A:HIS345
|
3.0
|
84.3
|
1.0
|
CE1
|
A:HIS340
|
3.1
|
67.2
|
1.0
|
CB
|
A:CYS324
|
3.4
|
80.7
|
1.0
|
CB
|
A:CYS327
|
3.5
|
82.8
|
1.0
|
N
|
A:CYS327
|
3.8
|
87.2
|
1.0
|
CG
|
A:HIS340
|
4.1
|
67.6
|
1.0
|
ND1
|
A:HIS345
|
4.1
|
78.5
|
1.0
|
CG
|
A:HIS345
|
4.1
|
82.1
|
1.0
|
ND1
|
A:HIS340
|
4.2
|
67.8
|
1.0
|
CA
|
A:CYS327
|
4.2
|
89.2
|
1.0
|
C
|
A:ASP326
|
4.4
|
89.8
|
1.0
|
CB
|
A:ASP326
|
4.4
|
88.3
|
1.0
|
CA
|
A:ASP326
|
4.7
|
89.2
|
1.0
|
C
|
A:CYS327
|
4.8
|
91.7
|
1.0
|
N
|
A:ASP326
|
4.8
|
90.0
|
1.0
|
CA
|
A:CYS324
|
4.8
|
82.7
|
1.0
|
O
|
A:CYS327
|
4.9
|
90.2
|
1.0
|
CB
|
A:LYS344
|
5.0
|
67.0
|
1.0
|
|
Zinc binding site 4 out
of 14 in 8sst
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Zinc Binding Sites List in 8sst
Zinc binding site 4 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_04.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn504
b:49.8
occ:1.00
|
NE2
|
A:HIS369
|
2.0
|
53.7
|
1.0
|
NE2
|
A:HIS373
|
2.0
|
55.4
|
1.0
|
SG
|
A:CYS356
|
2.3
|
51.4
|
1.0
|
SG
|
A:CYS353
|
2.3
|
50.6
|
1.0
|
CD2
|
A:HIS369
|
2.9
|
47.1
|
1.0
|
CD2
|
A:HIS373
|
2.9
|
55.1
|
1.0
|
CE1
|
A:HIS373
|
3.0
|
54.4
|
1.0
|
CE1
|
A:HIS369
|
3.1
|
48.9
|
1.0
|
CB
|
A:CYS353
|
3.3
|
50.6
|
1.0
|
CB
|
A:CYS356
|
3.5
|
52.1
|
1.0
|
N
|
A:CYS356
|
3.7
|
53.6
|
1.0
|
CG
|
A:HIS373
|
4.0
|
55.2
|
1.0
|
ND1
|
A:HIS373
|
4.1
|
51.5
|
1.0
|
CG
|
A:HIS369
|
4.1
|
56.0
|
1.0
|
CA
|
A:CYS356
|
4.1
|
57.0
|
1.0
|
ND1
|
A:HIS369
|
4.2
|
54.4
|
1.0
|
C
|
A:MET355
|
4.3
|
54.6
|
1.0
|
CB
|
A:TYR358
|
4.3
|
49.0
|
1.0
|
CB
|
A:MET355
|
4.4
|
56.1
|
1.0
|
C
|
A:CYS356
|
4.7
|
55.6
|
1.0
|
CA
|
A:MET355
|
4.7
|
55.3
|
1.0
|
N
|
A:MET355
|
4.7
|
56.3
|
1.0
|
CA
|
A:CYS353
|
4.8
|
52.2
|
1.0
|
O
|
A:CYS356
|
4.9
|
54.8
|
1.0
|
CE
|
A:MET355
|
5.0
|
57.7
|
1.0
|
|
Zinc binding site 5 out
of 14 in 8sst
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Zinc Binding Sites List in 8sst
Zinc binding site 5 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_05.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn505
b:52.3
occ:1.00
|
NE2
|
A:HIS401
|
2.0
|
58.9
|
1.0
|
NE2
|
A:HIS397
|
2.0
|
60.4
|
1.0
|
SG
|
A:CYS384
|
2.2
|
59.2
|
1.0
|
SG
|
A:CYS381
|
2.3
|
58.5
|
1.0
|
CE1
|
A:HIS401
|
2.9
|
53.3
|
1.0
|
CD2
|
A:HIS401
|
3.0
|
54.8
|
1.0
|
CE1
|
A:HIS397
|
3.0
|
52.3
|
1.0
|
CD2
|
A:HIS397
|
3.0
|
53.5
|
1.0
|
CB
|
A:CYS381
|
3.4
|
57.7
|
1.0
|
CB
|
A:CYS384
|
3.4
|
63.4
|
1.0
|
N
|
A:CYS384
|
3.7
|
63.3
|
1.0
|
ND1
|
A:HIS401
|
4.0
|
57.0
|
1.0
|
CG
|
A:HIS401
|
4.1
|
58.1
|
1.0
|
CA
|
A:CYS384
|
4.1
|
63.3
|
1.0
|
ND1
|
A:HIS397
|
4.1
|
53.3
|
1.0
|
CG
|
A:HIS397
|
4.2
|
52.0
|
1.0
|
C
|
A:LEU383
|
4.3
|
64.3
|
1.0
|
CB
|
A:TYR386
|
4.5
|
54.8
|
1.0
|
CB
|
A:LEU383
|
4.5
|
58.8
|
1.0
|
C
|
A:CYS384
|
4.6
|
65.1
|
1.0
|
N
|
A:LEU383
|
4.7
|
64.0
|
1.0
|
CA
|
A:LEU383
|
4.8
|
60.3
|
1.0
|
O
|
A:CYS384
|
4.8
|
69.5
|
1.0
|
CA
|
A:CYS381
|
4.8
|
65.0
|
1.0
|
SD
|
A:MET398
|
4.8
|
65.2
|
1.0
|
OG1
|
A:THR400
|
5.0
|
54.3
|
1.0
|
|
Zinc binding site 6 out
of 14 in 8sst
Go back to
Zinc Binding Sites List in 8sst
Zinc binding site 6 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_06.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn506
b:55.7
occ:1.00
|
NE2
|
A:HIS425
|
2.0
|
64.2
|
1.0
|
NE2
|
A:HIS430
|
2.0
|
69.2
|
1.0
|
SG
|
A:CYS412
|
2.3
|
68.5
|
1.0
|
SG
|
A:CYS409
|
2.4
|
69.8
|
1.0
|
CD2
|
A:HIS425
|
2.9
|
60.2
|
1.0
|
CD2
|
A:HIS430
|
2.9
|
70.0
|
1.0
|
CE1
|
A:HIS430
|
3.1
|
71.9
|
1.0
|
CE1
|
A:HIS425
|
3.1
|
58.8
|
1.0
|
CB
|
A:CYS409
|
3.3
|
69.8
|
1.0
|
CB
|
A:CYS412
|
3.4
|
69.8
|
1.0
|
N
|
A:CYS412
|
3.7
|
78.9
|
1.0
|
CA
|
A:CYS412
|
4.1
|
74.4
|
1.0
|
CG
|
A:HIS430
|
4.1
|
74.7
|
1.0
|
CG
|
A:HIS425
|
4.1
|
59.5
|
1.0
|
ND1
|
A:HIS430
|
4.1
|
74.7
|
1.0
|
ND1
|
A:HIS425
|
4.2
|
53.1
|
1.0
|
CB
|
A:ILE411
|
4.4
|
82.6
|
1.0
|
C
|
A:ILE411
|
4.7
|
84.4
|
1.0
|
C
|
A:CYS412
|
4.7
|
72.0
|
1.0
|
CA
|
A:CYS409
|
4.8
|
71.6
|
1.0
|
CB
|
A:ALA414
|
4.9
|
58.0
|
1.0
|
N
|
A:HIS413
|
4.9
|
71.4
|
1.0
|
CA
|
A:ILE411
|
5.0
|
81.8
|
1.0
|
N
|
A:ILE411
|
5.0
|
78.7
|
1.0
|
|
Zinc binding site 7 out
of 14 in 8sst
Go back to
Zinc Binding Sites List in 8sst
Zinc binding site 7 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_07.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn507
b:61.2
occ:1.00
|
NE2
|
A:HIS460
|
2.0
|
73.4
|
1.0
|
NE2
|
A:HIS455
|
2.0
|
70.4
|
1.0
|
SG
|
A:CYS442
|
2.3
|
72.4
|
1.0
|
SG
|
A:CYS439
|
2.3
|
65.9
|
1.0
|
CD2
|
A:HIS455
|
2.9
|
60.1
|
1.0
|
CD2
|
A:HIS460
|
2.9
|
73.1
|
1.0
|
CE1
|
A:HIS460
|
3.1
|
73.9
|
1.0
|
CE1
|
A:HIS455
|
3.1
|
66.2
|
1.0
|
CB
|
A:CYS439
|
3.3
|
67.2
|
1.0
|
CB
|
A:CYS442
|
3.5
|
70.2
|
1.0
|
N
|
A:CYS442
|
3.9
|
75.2
|
1.0
|
CG
|
A:HIS455
|
4.1
|
66.8
|
1.0
|
CG
|
A:HIS460
|
4.1
|
76.7
|
1.0
|
ND1
|
A:HIS460
|
4.1
|
79.4
|
1.0
|
ND1
|
A:HIS455
|
4.2
|
70.9
|
1.0
|
CA
|
A:CYS442
|
4.2
|
72.5
|
1.0
|
OG1
|
A:THR444
|
4.6
|
75.8
|
1.0
|
C
|
A:HIS441
|
4.6
|
74.4
|
1.0
|
CB
|
A:HIS441
|
4.7
|
77.8
|
1.0
|
CA
|
A:CYS439
|
4.7
|
66.3
|
1.0
|
O
|
A:CYS442
|
4.8
|
74.7
|
1.0
|
CB
|
A:THR444
|
4.8
|
73.2
|
1.0
|
C
|
A:CYS442
|
4.8
|
73.1
|
1.0
|
N
|
A:HIS441
|
4.9
|
71.3
|
1.0
|
CA
|
A:HIS441
|
5.0
|
77.5
|
1.0
|
|
Zinc binding site 8 out
of 14 in 8sst
Go back to
Zinc Binding Sites List in 8sst
Zinc binding site 8 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_08.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn501
b:212.2
occ:1.00
|
NE2
|
D:HIS288
|
2.0
|
192.1
|
1.0
|
NE2
|
D:HIS284
|
2.0
|
205.5
|
1.0
|
SG
|
D:CYS268
|
2.3
|
204.9
|
1.0
|
SG
|
D:CYS271
|
2.3
|
218.0
|
1.0
|
CD2
|
D:HIS284
|
2.4
|
201.1
|
1.0
|
CD2
|
D:HIS288
|
2.8
|
181.9
|
1.0
|
CE1
|
D:HIS288
|
3.2
|
188.3
|
1.0
|
CE1
|
D:HIS284
|
3.2
|
205.5
|
1.0
|
CB
|
D:CYS268
|
3.4
|
213.8
|
1.0
|
CG
|
D:HIS284
|
3.7
|
202.0
|
1.0
|
CB
|
D:CYS271
|
3.8
|
209.6
|
1.0
|
CG
|
D:HIS288
|
4.0
|
174.6
|
1.0
|
ND1
|
D:HIS284
|
4.0
|
204.0
|
1.0
|
N
|
D:CYS271
|
4.0
|
206.2
|
1.0
|
ND1
|
D:HIS288
|
4.2
|
179.3
|
1.0
|
CB
|
D:LEU270
|
4.3
|
188.9
|
1.0
|
CB
|
D:TYR273
|
4.5
|
224.9
|
1.0
|
CA
|
D:CYS271
|
4.5
|
210.0
|
1.0
|
O
|
D:HIS284
|
4.6
|
175.8
|
1.0
|
C
|
D:LEU270
|
4.6
|
196.7
|
1.0
|
SD
|
D:MET285
|
4.8
|
170.6
|
1.0
|
CA
|
D:LEU270
|
4.8
|
193.6
|
1.0
|
CA
|
D:CYS268
|
4.8
|
213.3
|
1.0
|
N
|
D:LEU270
|
4.8
|
194.8
|
1.0
|
CB
|
D:HIS284
|
4.9
|
202.1
|
1.0
|
|
Zinc binding site 9 out
of 14 in 8sst
Go back to
Zinc Binding Sites List in 8sst
Zinc binding site 9 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_09.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn502
b:80.6
occ:1.00
|
NE2
|
D:HIS312
|
2.0
|
78.9
|
1.0
|
NE2
|
D:HIS316
|
2.0
|
78.6
|
1.0
|
SG
|
D:CYS299
|
2.2
|
79.7
|
1.0
|
SG
|
D:CYS296
|
2.3
|
87.7
|
1.0
|
CD2
|
D:HIS312
|
2.6
|
76.9
|
1.0
|
CD2
|
D:HIS316
|
2.7
|
75.6
|
1.0
|
CE1
|
D:HIS316
|
3.2
|
78.9
|
1.0
|
CE1
|
D:HIS312
|
3.2
|
76.5
|
1.0
|
CB
|
D:CYS296
|
3.3
|
86.0
|
1.0
|
CB
|
D:CYS299
|
3.6
|
87.3
|
1.0
|
N
|
D:CYS299
|
3.7
|
88.7
|
1.0
|
CG
|
D:HIS312
|
3.8
|
76.2
|
1.0
|
CG
|
D:HIS316
|
3.9
|
75.7
|
1.0
|
ND1
|
D:HIS312
|
4.0
|
72.9
|
1.0
|
ND1
|
D:HIS316
|
4.1
|
78.5
|
1.0
|
CB
|
D:LEU298
|
4.2
|
85.0
|
1.0
|
CA
|
D:CYS299
|
4.2
|
89.7
|
1.0
|
C
|
D:LEU298
|
4.5
|
88.8
|
1.0
|
CA
|
D:LEU298
|
4.7
|
86.9
|
1.0
|
N
|
D:LEU298
|
4.7
|
87.5
|
1.0
|
CA
|
D:CYS296
|
4.7
|
89.9
|
1.0
|
C
|
D:CYS299
|
4.8
|
95.7
|
1.0
|
CD2
|
D:LEU313
|
4.9
|
79.3
|
1.0
|
O
|
D:CYS299
|
4.9
|
92.4
|
1.0
|
O
|
D:HIS312
|
5.0
|
71.0
|
1.0
|
|
Zinc binding site 10 out
of 14 in 8sst
Go back to
Zinc Binding Sites List in 8sst
Zinc binding site 10 out
of 14 in the Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_10.jpg) Mono view
![](/pictures/ZN/pdb/ss/8sst-ZN-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Znfs 1-7 of Ccctc-Binding Factor (Ctcf) K365T Mutant Complexed with 23MER within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn503
b:122.5
occ:1.00
|
NE2
|
D:HIS345
|
2.0
|
124.5
|
1.0
|
NE2
|
D:HIS340
|
2.0
|
109.2
|
1.0
|
SG
|
D:CYS327
|
2.3
|
101.2
|
1.0
|
SG
|
D:CYS324
|
2.3
|
118.4
|
1.0
|
CD2
|
D:HIS345
|
2.7
|
119.9
|
1.0
|
CD2
|
D:HIS340
|
2.8
|
101.5
|
1.0
|
CE1
|
D:HIS340
|
3.1
|
103.0
|
1.0
|
CE1
|
D:HIS345
|
3.2
|
114.7
|
1.0
|
CB
|
D:CYS327
|
3.3
|
117.9
|
1.0
|
N
|
D:CYS327
|
3.5
|
121.3
|
1.0
|
CB
|
D:CYS324
|
3.6
|
123.5
|
1.0
|
CG
|
D:HIS345
|
3.9
|
116.8
|
1.0
|
CG
|
D:HIS340
|
3.9
|
96.4
|
1.0
|
CA
|
D:CYS327
|
3.9
|
119.2
|
1.0
|
CB
|
D:ASP326
|
4.0
|
123.1
|
1.0
|
ND1
|
D:HIS340
|
4.1
|
95.0
|
1.0
|
ND1
|
D:HIS345
|
4.2
|
114.5
|
1.0
|
C
|
D:ASP326
|
4.5
|
124.1
|
1.0
|
CA
|
D:ASP326
|
4.7
|
125.8
|
1.0
|
C
|
D:CYS327
|
4.7
|
119.8
|
1.0
|
N
|
D:ASP326
|
4.8
|
128.4
|
1.0
|
CG
|
D:ASP326
|
4.8
|
125.5
|
1.0
|
OD2
|
D:ASP326
|
4.9
|
122.3
|
1.0
|
CA
|
D:CYS324
|
4.9
|
121.9
|
1.0
|
CB
|
D:MET329
|
5.0
|
105.2
|
1.0
|
|
Reference:
J.Yang,
J.R.Horton,
B.Liu,
V.G.Corces,
R.M.Blumenthal,
X.Zhang,
X.Cheng.
Structures of Ctcf-Dna Complexes Including All 11 Zinc Fingers. Nucleic Acids Res. 2023.
ISSN: ESSN 1362-4962
PubMed: 37439339
DOI: 10.1093/NAR/GKAD594
Page generated: Thu Dec 28 13:40:43 2023
|