Zinc in PDB 8slf: Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound)

Protein crystallography data

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound), PDB code: 8slf was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.60 / 2.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 173.757, 86.297, 98.986, 90, 104.2, 90
R / Rfree (%) 18.3 / 22.4

Other elements in 8slf:

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound) (pdb code 8slf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound), PDB code: 8slf:

Zinc binding site 1 out of 1 in 8slf

Go back to Zinc Binding Sites List in 8slf
Zinc binding site 1 out of 1 in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:177.7
occ:1.00
SG B:CYS90 2.3 156.4 1.0
SG B:CYS128 2.3 172.2 1.0
SG B:CYS93 2.3 175.4 1.0
SG B:CYS125 2.4 183.5 1.0
CB B:CYS90 3.2 152.6 1.0
CB B:CYS125 3.3 177.8 1.0
CB B:CYS128 3.5 166.0 1.0
CB B:CYS93 3.7 172.2 1.0
N B:CYS128 3.8 167.8 1.0
N B:CYS93 4.0 170.5 1.0
CA B:CYS128 4.2 171.7 1.0
CA B:CYS93 4.4 162.3 1.0
CB B:ASP127 4.5 170.6 1.0
N B:GLY129 4.6 178.9 1.0
C B:ASP127 4.6 167.5 1.0
CA B:CYS90 4.7 147.4 1.0
CA B:CYS125 4.8 175.9 1.0
C B:CYS128 4.8 167.1 1.0
CB B:ASN92 4.9 162.3 1.0
CA B:ASP127 4.9 171.1 1.0
N B:ASP127 5.0 176.3 1.0
C B:CYS93 5.0 142.4 1.0
N B:HIS94 5.0 147.0 1.0

Reference:

S.Lovell, L.Liu, K.P.Battaile, S.Seibold. Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound) To Be Published.
Page generated: Fri Jul 28 07:30:55 2023

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