Zinc in PDB 8rqb: Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
Other elements in 8rqb:
The structure of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Zinc atom in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
(pdb code 8rqb). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the
Cryo-Em Structure of Mouse Heavy-Chain Apoferritin, PDB code: 8rqb:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 1 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn202
b:25.6
occ:0.50
|
O
|
A:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
A:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
A:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
A:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
A:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
A:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
A:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
A:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
A:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
A:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
A:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
A:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
A:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
A:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
A:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
A:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
A:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
A:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
A:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
A:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
A:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
A:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
A:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
A:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
A:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
A:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
A:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
A:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
A:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
A:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
A:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 2 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 2 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn202
b:25.6
occ:0.50
|
O
|
B:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
B:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
B:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
B:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
B:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
B:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
B:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
B:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
B:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
B:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
B:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
B:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
B:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
B:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
B:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
B:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
B:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
B:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
B:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
B:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
B:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
B:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
B:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
B:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
B:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
B:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
B:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
B:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
B:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
B:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
B:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 3 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 3 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn202
b:25.6
occ:0.50
|
O
|
C:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
C:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
C:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
C:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
C:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
C:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
C:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
C:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
C:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
C:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
C:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
C:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
C:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
C:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
C:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
C:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
C:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
C:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
C:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
C:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
C:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
C:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
C:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
C:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
C:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
C:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
C:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
C:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
C:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
C:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
C:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 4 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 4 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn201
b:25.6
occ:0.50
|
O
|
D:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
D:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
D:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
D:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
D:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
D:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
D:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
D:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
D:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
D:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
D:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
D:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
D:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
D:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
D:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
D:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
D:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
D:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
D:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
D:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
D:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
D:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
D:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
D:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
D:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
D:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
D:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
D:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
D:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
D:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
D:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 5 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 5 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn201
b:25.6
occ:0.50
|
O
|
E:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
E:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
E:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
E:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
E:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
E:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
E:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
E:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
E:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
E:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
E:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
E:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
E:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
E:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
E:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
E:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
E:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
E:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
E:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
E:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
E:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
E:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
E:HOH331
|
4.4
|
37.1
|
1.0
|
|
ND1
|
E:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
E:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
E:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
E:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
E:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
E:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
E:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
E:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 6 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 6 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn201
b:25.6
occ:0.50
|
O
|
F:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
F:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
F:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
F:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
F:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
F:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
F:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
F:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
F:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
F:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
F:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
F:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
F:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
F:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
F:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
F:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
F:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
F:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
F:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
F:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
F:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
F:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
F:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
F:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
F:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
F:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
F:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
F:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
F:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
F:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
F:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 7 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 7 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn201
b:25.6
occ:0.50
|
O
|
G:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
G:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
G:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
G:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
G:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
G:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
G:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
G:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
G:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
G:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
G:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
G:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
G:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
G:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
G:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
G:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
G:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
G:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
G:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
G:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
G:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
G:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
G:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
G:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
G:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
G:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
G:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
G:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
G:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
G:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
G:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 8 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 8 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn201
b:25.6
occ:0.50
|
O
|
H:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
H:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
H:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
H:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
H:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
H:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
H:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
H:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
H:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
H:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
H:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
H:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
H:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
H:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
H:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
H:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
H:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
H:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
H:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
H:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
H:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
H:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
H:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
H:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
H:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
H:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
H:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
H:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
H:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
H:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
H:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 9 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 9 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:25.6
occ:0.50
|
O
|
I:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
I:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
I:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
I:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
I:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
I:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
I:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
I:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
I:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
I:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
I:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
I:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
I:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
I:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
I:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
I:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
I:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
I:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
I:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
I:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
I:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
I:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
I:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
I:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
I:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
I:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
I:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
I:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
I:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
I:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
I:GLU107
|
4.9
|
25.6
|
1.0
|
|
Zinc binding site 10 out
of 24 in 8rqb
Go back to
Zinc Binding Sites List in 8rqb
Zinc binding site 10 out
of 24 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn201
b:25.6
occ:0.50
|
O
|
J:HOH325
|
2.0
|
25.7
|
0.5
|
|
OE1
|
J:GLU27
|
2.0
|
23.7
|
1.0
|
|
OE1
|
J:GLU62
|
2.1
|
26.5
|
1.0
|
|
O
|
J:HOH336
|
2.1
|
30.0
|
1.0
|
|
ND1
|
J:HIS65
|
2.3
|
18.5
|
0.5
|
|
CD
|
J:GLU62
|
3.0
|
24.5
|
1.0
|
|
CD
|
J:GLU27
|
3.0
|
21.9
|
1.0
|
|
CE1
|
J:HIS65
|
3.2
|
18.8
|
0.5
|
|
OE2
|
J:GLU62
|
3.3
|
30.4
|
1.0
|
|
CD2
|
J:HIS65
|
3.3
|
26.8
|
0.5
|
|
OE2
|
J:GLU27
|
3.4
|
23.0
|
1.0
|
|
CG
|
J:HIS65
|
3.4
|
16.8
|
0.5
|
|
CG
|
J:HIS65
|
3.6
|
23.4
|
0.5
|
|
CB
|
J:HIS65
|
3.7
|
14.8
|
0.5
|
|
CB
|
J:HIS65
|
3.7
|
18.4
|
0.5
|
|
OE1
|
J:GLN141
|
3.8
|
24.8
|
1.0
|
|
O
|
J:HOH326
|
4.0
|
34.6
|
1.0
|
|
NE2
|
J:HIS65
|
4.1
|
27.8
|
0.5
|
|
CG1
|
J:VAL110
|
4.2
|
16.6
|
1.0
|
|
CG
|
J:GLU62
|
4.3
|
18.7
|
1.0
|
|
NE2
|
J:HIS65
|
4.3
|
19.6
|
0.5
|
|
CG
|
J:GLU27
|
4.4
|
18.2
|
1.0
|
|
O
|
J:HOH332
|
4.4
|
37.1
|
1.0
|
|
ND1
|
J:HIS65
|
4.4
|
26.5
|
0.5
|
|
CD2
|
J:HIS65
|
4.5
|
18.3
|
0.5
|
|
CA
|
J:GLU62
|
4.5
|
14.2
|
1.0
|
|
CB
|
J:GLU62
|
4.7
|
15.3
|
1.0
|
|
CD
|
J:GLN141
|
4.7
|
20.8
|
1.0
|
|
CE1
|
J:HIS65
|
4.7
|
29.1
|
0.5
|
|
CB
|
J:GLU27
|
4.8
|
14.8
|
1.0
|
|
OE1
|
J:GLU107
|
4.9
|
25.6
|
1.0
|
|
Reference:
S.Nazarov,
I.Mohammed,
B.Kucukoglu,
A.Myasnikov,
H.Stahlberg.
Cryo-Em Structure of Mouse Heavy-Chain Apoferritin To Be Published.
Page generated: Thu Oct 31 10:35:37 2024
|
