Zinc in PDB 8rdu: Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map

The structure of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map also contains other interesting chemical elements:

Magnesium

(Mg)

17 atoms

The binding sites of Zinc atom in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map (pdb code 8rdu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map, PDB code: 8rdu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn200 b:57.9 occ:1.00 SG C:CYS136 2.3 34.1 1.0 SG C:CYS151 2.3 40.3 1.0 SG C:CYS133 2.3 30.6 1.0 SG C:CYS154 2.3 46.9 1.0 CB C:CYS151 3.2 30.6 1.0 CB C:CYS133 3.2 26.4 1.0 CB C:CYS136 3.3 30.9 1.0 CB C:CYS154 3.5 37.1 1.0 N C:CYS154 3.8 39.2 1.0 N C:CYS136 3.8 31.1 1.0 CA C:CYS136 4.1 28.0 1.0 CA C:CYS154 4.2 37.5 1.0 CB C:ARG153 4.6 34.1 1.0 OD1 C:ASN135 4.6 42.0 1.0 C C:CYS136 4.6 27.5 1.0 CB C:ALA138 4.6 24.0 1.0 CA C:CYS151 4.6 30.9 1.0 CA C:CYS133 4.6 23.5 1.0 CB C:ASN135 4.7 37.7 1.0 C C:ASN135 4.8 30.6 1.0 N C:ALA138 4.8 26.2 1.0 N C:GLN137 4.8 28.3 1.0 C C:ARG153 4.9 40.2 1.0 C C:CYS154 4.9 41.6 1.0 N C:ARG153 5.0 37.2 1.0

Zinc binding site 2 out of 2 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:63.2 occ:1.00 ND1 C:HIS125 2.0 34.5 1.0 SG C:CYS100 2.3 34.0 1.0 SG C:CYS103 2.3 29.7 1.0 SG C:CYS122 2.3 35.6 1.0 CE1 C:HIS125 2.8 33.7 1.0 CG C:HIS125 3.2 32.1 1.0 CB C:CYS122 3.2 23.9 1.0 CB C:CYS100 3.4 21.2 1.0 CB C:CYS103 3.6 26.1 1.0 N C:CYS103 3.6 31.2 1.0 CB C:HIS125 3.8 31.0 1.0 NE2 C:HIS125 4.0 34.8 1.0 O C:HOH311 4.0 26.3 1.0 CA C:CYS103 4.0 29.4 1.0 CD2 C:HIS125 4.2 34.9 1.0 C C:ALA102 4.4 30.6 1.0 N C:HIS125 4.4 31.1 1.0 CB C:ALA102 4.5 29.2 1.0 CA C:CYS122 4.7 29.0 1.0 CA C:HIS125 4.8 27.8 1.0 CA C:CYS100 4.8 24.2 1.0 CB C:ARG124 4.8 32.2 1.0 CA C:ALA102 4.9 27.6 1.0

F.Tenjo-Castano, N.Sofos, L.S.Stutzke, P.Temperini, A.Fuglsang, T.Pape, P.Mesa, G.Montoya. Conformational Landscape of the Type V-K Crispr-Associated Transposon Integration Assembly. Mol.Cell 2024.
ISSN: ISSN 1097-2765
PubMed: 38834066
DOI: 10.1016/J.MOLCEL.2024.05.005