Zinc in PDB 8qnh: Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23)

The structure of Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23), PDB code: 8qnh was solved by M.Schimpl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.80 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.04, 73.594, 93.973, 90, 90, 90
R / Rfree (%)	22.2 / 24.8

The structure of Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23) also contains other interesting chemical elements:

Sodium	(Na)	1 atom
Fluorine	(F)	3 atoms

The binding sites of Zinc atom in the Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23) (pdb code 8qnh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23), PDB code: 8qnh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:38.8 occ:1.00 SG A:CYS393 2.3 36.6 1.0 SG A:CYS373 2.3 38.9 1.0 SG A:CYS376 2.4 38.8 1.0 SG A:CYS396 2.5 36.5 1.0 CB A:CYS373 3.1 39.8 1.0 CB A:CYS396 3.1 37.8 1.0 CB A:CYS376 3.3 39.1 1.0 CB A:CYS393 3.4 33.3 1.0 N A:CYS376 3.8 39.9 1.0 N A:CYS393 3.9 35.0 1.0 CA A:CYS376 4.1 39.8 1.0 CA A:CYS393 4.2 34.8 1.0 CA A:CYS396 4.3 38.6 1.0 N A:CYS396 4.3 39.8 1.0 ND2 A:ASN379 4.4 46.4 1.0 CA A:CYS373 4.5 39.0 1.0 CB A:ILE375 4.6 39.6 1.0 CB A:ASN379 4.6 41.9 1.0 C A:CYS393 4.8 36.2 1.0 C A:ILE375 4.8 39.3 1.0 O A:CYS393 4.8 34.6 1.0 C A:CYS373 4.9 38.4 1.0 O A:ASN379 4.9 39.2 1.0 O A:CYS373 4.9 37.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:53.1 occ:1.00 ND1 A:HIS390 2.0 55.5 1.0 SG A:CYS388 2.2 55.2 1.0 SG A:CYS408 2.4 48.1 1.0 SG A:CYS411 2.4 65.1 1.0 CE1 A:HIS390 3.0 56.2 1.0 CG A:HIS390 3.0 52.8 1.0 CB A:CYS388 3.0 54.0 1.0 CB A:CYS408 3.0 52.4 1.0 CB A:HIS390 3.4 47.0 1.0 CB A:CYS411 3.5 62.2 1.0 N A:CYS411 3.8 60.4 1.0 NE2 A:HIS390 4.1 56.3 1.0 CD2 A:HIS390 4.1 54.7 1.0 CA A:CYS411 4.2 61.1 1.0 N A:HIS390 4.3 45.0 1.0 CA A:CYS388 4.4 53.2 1.0 CA A:HIS390 4.5 44.0 1.0 CA A:CYS408 4.5 54.5 1.0 CB A:PHE410 4.6 59.7 1.0 C A:CYS388 4.6 52.3 1.0 O A:CYS388 4.8 53.5 1.0 C A:PHE410 4.8 60.4 1.0 C A:CYS411 4.9 61.2 1.0 CB A:CYS413 5.0 67.3 1.0

M.Schimpl, M.Schimpl. N/A N/A.