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Zinc in PDB 8qb3: Addobody Zinc Containing Condition

Protein crystallography data

The structure of Addobody Zinc Containing Condition, PDB code: 8qb3 was solved by D.Buzas, C.Toelzer, I.Berger, C.Schaffitzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.74 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 101.478, 103.072, 167.224, 90, 90, 90
R / Rfree (%) 27.1 / 29.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Addobody Zinc Containing Condition (pdb code 8qb3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Addobody Zinc Containing Condition, PDB code: 8qb3:

Zinc binding site 1 out of 1 in 8qb3

Go back to Zinc Binding Sites List in 8qb3
Zinc binding site 1 out of 1 in the Addobody Zinc Containing Condition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Addobody Zinc Containing Condition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:23.4
occ:0.82
OE2 E:GLU13 2.1 32.4 1.0
NE2 A:HIS151 2.3 31.3 1.0
CD2 A:HIS151 2.7 23.4 1.0
OE1 E:GLU13 2.7 24.6 1.0
CD E:GLU13 2.7 27.9 1.0
CE1 A:HIS151 3.4 23.6 1.0
CG A:HIS151 3.9 23.9 1.0
CG E:GLU13 4.1 29.6 1.0
ND1 A:HIS151 4.2 23.3 1.0
CD A:ARG150 4.8 21.8 1.0
CG A:ARG150 4.8 20.3 1.0
OH E:TYR14 4.9 35.3 1.0
CB E:GLU13 5.0 31.5 1.0

Reference:

D.Buzas, H.Sun, C.Toelzer, S.Yadav, U.Borucu, G.Gautam, K.Gupta, J.Bufton, J.Capin, R.Sessions, F.Garzoni, I.Berger, C.Schaffitzel. Engineering the Addobody Protein Scaffold For Generation of High-Avidity Addomer Super-Binders To Be Published.
Page generated: Thu Oct 31 09:59:30 2024

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