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Zinc in PDB 8pfg: Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold

Enzymatic activity of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold

All present enzymatic activity of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold:
2.7.7.6;

Other elements in 8pfg:

The structure of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold (pdb code 8pfg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold, PDB code: 8pfg:

Zinc binding site 1 out of 1 in 8pfg

Go back to Zinc Binding Sites List in 8pfg
Zinc binding site 1 out of 1 in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), Not Fully Complementary Scaffold within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1501

b:135.2
occ:1.00
 SG J:CYS814 2.3 77.2 1.0
SG J:CYS888 2.3 97.4 1.0
SG J:CYS895 2.3 97.7 1.0
SG J:CYS898 2.3 90.0 1.0
CB J:CYS898 2.6 73.9 1.0
CB J:CYS895 3.1 76.6 1.0
CA J:CYS898 3.8 69.8 1.0
CB J:CYS888 3.8 80.9 1.0
N J:CYS898 3.8 72.1 1.0
NH2 J:ARG883 3.9 72.7 1.0
N J:CYS895 3.9 71.5 1.0
CA J:CYS895 4.0 65.3 1.0
CA J:CYS888 4.0 77.4 1.0
CB J:CYS814 4.1 72.3 1.0
N J:CYS814 4.3 77.0 1.0
O J:CYS895 4.5 77.1 1.0
C J:CYS895 4.6 71.2 1.0
N J:ASP889 4.6 77.2 1.0
OG1 J:THR816 4.7 93.6 1.0
C J:CYS888 4.8 77.0 1.0
CZ J:ARG883 4.8 68.9 1.0
NE J:ARG883 4.8 65.3 1.0
CA J:CYS814 4.9 72.0 1.0
C J:CYS898 4.9 66.4 1.0
OG1 J:THR890 5.0 102.5 1.0

Reference:

P.K.Zuber, N.Said, T.Hilal, B.Wang, B.Loll, J.Gonzalez-Higueras, C.A.Ramirez-Sarmiento, G.A.Belogurov, I.Artsimovitch, M.C.Wahl, S.H.Knauer. Concerted Transformation of A Hyper-Paused Transcription Complex and Its Reinforcing Protein. Nat Commun V. 15 3040 2024.
ISSN: ESSN 2041-1723
PubMed: 38589445
DOI: 10.1038/S41467-024-47368-4
Page generated: Thu Oct 31 09:27:34 2024

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