Zinc in PDB 8oej: Extended Rpa-Dna Nucleoprotein Filament

The binding sites of Zinc atom in the Extended Rpa-Dna Nucleoprotein Filament (pdb code 8oej). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Extended Rpa-Dna Nucleoprotein Filament, PDB code: 8oej:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Extended Rpa-Dna Nucleoprotein Filament


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Extended Rpa-Dna Nucleoprotein Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:200.0 occ:1.00 ND1 A:HIS239 2.1 200.0 1.0 SG A:CYS236 2.2 200.0 1.0 SG A:CYS218 2.2 200.0 1.0 SG A:CYS221 2.3 200.0 1.0 CE1 A:HIS239 2.9 200.0 1.0 CB A:CYS218 2.9 200.0 1.0 CG A:HIS239 3.2 200.0 1.0 CB A:CYS221 3.6 200.0 1.0 CB A:CYS236 3.6 200.0 1.0 CB A:HIS239 3.7 200.0 1.0 N A:CYS221 3.8 200.0 1.0 N A:HIS239 4.0 200.0 1.0 NE2 A:HIS239 4.1 200.0 1.0 CA A:CYS221 4.2 200.0 1.0 CB A:GLU238 4.2 200.0 1.0 CD2 A:HIS239 4.3 200.0 1.0 CA A:CYS218 4.4 200.0 1.0 CA A:HIS239 4.5 200.0 1.0 CB A:GLU220 4.6 200.0 1.0 C A:GLU238 4.7 200.0 1.0 C A:GLU220 4.8 200.0 1.0 OE2 A:GLU238 4.9 200.0 1.0 CA A:GLU238 4.9 200.0 1.0 N A:GLU238 4.9 200.0 1.0 CA A:CYS236 4.9 200.0 1.0 N A:GLU220 4.9 200.0 1.0 C A:CYS218 4.9 200.0 1.0 C A:CYS221 5.0 200.0 1.0

Zinc binding site 2 out of 2 in the Extended Rpa-Dna Nucleoprotein Filament


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Extended Rpa-Dna Nucleoprotein Filament within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn401 b:200.0 occ:1.00 ND1 D:HIS239 2.1 200.0 1.0 SG D:CYS236 2.2 200.0 1.0 SG D:CYS218 2.2 200.0 1.0 SG D:CYS221 2.3 200.0 1.0 CE1 D:HIS239 2.9 200.0 1.0 CB D:CYS218 2.9 200.0 1.0 CG D:HIS239 3.2 200.0 1.0 CB D:CYS221 3.6 200.0 1.0 CB D:CYS236 3.6 200.0 1.0 CB D:HIS239 3.7 200.0 1.0 N D:CYS221 3.8 200.0 1.0 N D:HIS239 4.0 200.0 1.0 NE2 D:HIS239 4.1 200.0 1.0 CA D:CYS221 4.2 200.0 1.0 CB D:GLU238 4.2 200.0 1.0 CD2 D:HIS239 4.3 200.0 1.0 CA D:CYS218 4.4 200.0 1.0 CA D:HIS239 4.5 200.0 1.0 CB D:GLU220 4.6 200.0 1.0 C D:GLU238 4.7 200.0 1.0 C D:GLU220 4.8 200.0 1.0 OE2 D:GLU238 4.9 200.0 1.0 CA D:GLU238 4.9 200.0 1.0 N D:GLU238 4.9 200.0 1.0 CA D:CYS236 4.9 200.0 1.0 N D:GLU220 4.9 200.0 1.0 C D:CYS218 4.9 200.0 1.0 C D:CYS221 5.0 200.0 1.0

C.Madru, M.Martinez-Carranza, S.Laurent, A.C.Alberti, M.Chevreuil, B.Raynal, A.Haouz, R.A.Le Meur, M.Delarue, G.Henneke, D.Flament, M.Krupovic, P.Legrand, L.Sauguet. Dna-Binding Mechanism and Evolution of Replication Protein A. Nat Commun V. 14 2326 2023.
ISSN: ESSN 2041-1723
PubMed: 37087464
DOI: 10.1038/S41467-023-38048-W