Zinc in PDB 8k4b: Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion

The binding sites of Zinc atom in the Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion (pdb code 8k4b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion, PDB code: 8k4b:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn802 b:30.0 occ:1.00 O3G A:ATP801 2.0 9.1 1.0 O2B A:ATP801 2.1 11.2 1.0 OG1 A:THR524 2.6 155.8 1.0 PB A:ATP801 3.2 10.9 1.0 PG A:ATP801 3.3 9.6 1.0 CB A:THR524 3.4 155.8 1.0 O3B A:ATP801 3.4 10.3 1.0 O2A A:ATP801 3.7 14.1 1.0 OE1 A:GLN565 3.8 137.1 1.0 CG A:LYS523 3.8 169.0 1.0 OG B:SER623 4.0 163.0 1.0 N A:THR524 4.2 155.8 1.0 O1G A:ATP801 4.2 9.5 1.0 CD A:LYS523 4.2 169.0 1.0 O3A A:ATP801 4.3 12.0 1.0 O2G A:ATP801 4.3 9.6 1.0 O1B A:ATP801 4.3 10.6 1.0 PA A:ATP801 4.4 14.4 1.0 CA A:THR524 4.4 155.8 1.0 CG2 A:THR524 4.5 155.8 1.0 CD A:GLN565 4.7 137.1 1.0 NE2 A:GLN565 4.7 137.1 1.0 O1A A:ATP801 4.8 13.6 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn802 b:30.0 occ:1.00 O3G B:ATP801 2.0 9.1 1.0 O2B B:ATP801 2.1 11.2 1.0 OG1 B:THR524 2.6 155.8 1.0 PB B:ATP801 3.2 10.9 1.0 PG B:ATP801 3.3 9.6 1.0 CB B:THR524 3.4 155.8 1.0 O3B B:ATP801 3.4 10.3 1.0 O2A B:ATP801 3.7 14.1 1.0 OE1 B:GLN565 3.8 137.1 1.0 OG A:SER623 3.9 163.0 1.0 N B:THR524 4.2 155.8 1.0 O1G B:ATP801 4.2 9.5 1.0 O3A B:ATP801 4.3 12.0 1.0 O2G B:ATP801 4.3 9.6 1.0 O1B B:ATP801 4.3 10.6 1.0 PA B:ATP801 4.4 14.4 1.0 CA B:THR524 4.4 155.8 1.0 CG B:LYS523 4.4 169.0 1.0 CG2 B:THR524 4.5 155.8 1.0 CD B:GLN565 4.7 137.1 1.0 NE2 B:GLN565 4.7 137.1 1.0 O1A B:ATP801 4.8 13.6 1.0 CD B:LYS523 5.0 169.0 1.0

Y.Lin, X.Xin, L.Min. Cryo-Em Structure of Nucleotide-Bound Coma with Zinc Ion To Be Published.