Atomistry » Zinc » PDB 8jp6-8k4z » 8k1g
Atomistry »
  Zinc »
    PDB 8jp6-8k4z »
      8k1g »

Zinc in PDB 8k1g: Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae

Enzymatic activity of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae

All present enzymatic activity of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae:
1.1.1.6;

Protein crystallography data

The structure of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae, PDB code: 8k1g was solved by W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.50 / 2.09
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 182.014, 182.014, 80.707, 90, 90, 90
R / Rfree (%) 18.6 / 20.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae (pdb code 8k1g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae, PDB code: 8k1g:

Zinc binding site 1 out of 1 in 8k1g

Go back to Zinc Binding Sites List in 8k1g
Zinc binding site 1 out of 1 in the Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ethylene Glycol-Bound Glycerol Dehydrogenase From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:38.2
occ:0.28
 O A:HOH624 2.2 34.3 0.5
NE2 A:HIS271 2.3 38.0 1.0
O2 A:EDO407 2.6 36.3 0.7
O1 A:EDO402 2.7 45.2 1.0
C2 A:EDO407 2.8 38.1 0.7
CD2 A:HIS271 2.8 30.1 1.0
OD2 A:ASP121 2.9 39.1 1.0
O A:HOH575 2.9 37.9 1.0
OD2 A:ASP171 3.0 38.3 1.0
OD1 A:ASP171 3.1 37.8 1.0
C1 A:EDO407 3.1 31.0 0.7
CG A:ASP171 3.2 33.5 1.0
CE1 A:HIS271 3.4 37.4 1.0
CG A:ASP121 3.4 37.0 1.0
OD1 A:ASP121 3.4 41.4 1.0
C1 A:EDO402 3.9 44.6 1.0
CG A:HIS271 4.1 34.1 1.0
CG2 A:VAL275 4.1 28.8 1.0
O2 A:EDO402 4.2 47.3 1.0
ND1 A:HIS271 4.3 38.7 1.0
CB A:ASP171 4.3 27.0 1.0
O1 A:EDO407 4.5 31.4 0.7
C2 A:EDO402 4.6 46.9 1.0
O A:HOH570 4.7 35.6 1.0
CB A:ASP121 4.7 30.4 1.0
CA A:ASP171 4.8 25.4 1.0

Reference:

G.S.Ko, T.Q.Nguyen, S.Kho, W.Kang. Crystal Structure of Glycerol Dehydrogenase From Klebsiella Pneumoniae J. Korean Chem. Soc. V. 68 32 2024.
DOI: 10.5012/JKCS.2024.68.1.32
Page generated: Thu Oct 31 08:29:35 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy