Zinc in PDB 8jwu: Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
Enzymatic activity of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
All present enzymatic activity of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker:
2.3.2.23;
2.3.2.24;
Protein crystallography data
The structure of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker, PDB code: 8jwu
was solved by
H.S.Lee,
I.Bang,
H.-J.Choi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.89 /
3.58
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
210.54,
102.05,
78.64,
90,
95.92,
90
|
R / Rfree (%)
|
21.6 /
26.5
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
23;
Binding sites:
The binding sites of Zinc atom in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
(pdb code 8jwu). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 23 binding sites of Zinc where determined in the
Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker, PDB code: 8jwu:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 23 in 8jwu
Go back to
Zinc Binding Sites List in 8jwu
Zinc binding site 1 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_01.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn501
b:106.3
occ:1.00
|
ND1
|
A:HIS45
|
2.1
|
134.7
|
1.0
|
SG
|
A:CYS23
|
2.3
|
119.4
|
1.0
|
SG
|
A:CYS20
|
2.3
|
120.8
|
1.0
|
SG
|
A:CYS48
|
2.3
|
116.8
|
1.0
|
CB
|
A:CYS20
|
2.8
|
121.5
|
1.0
|
CG
|
A:HIS45
|
2.9
|
110.8
|
1.0
|
CE1
|
A:HIS45
|
3.1
|
140.8
|
1.0
|
CB
|
A:HIS45
|
3.2
|
101.2
|
1.0
|
CB
|
A:CYS23
|
3.3
|
109.1
|
1.0
|
CB
|
A:CYS48
|
3.4
|
108.5
|
1.0
|
N
|
A:CYS23
|
3.9
|
147.2
|
1.0
|
N
|
A:HIS45
|
3.9
|
102.9
|
1.0
|
CD2
|
A:HIS45
|
4.0
|
109.4
|
1.0
|
NE2
|
A:HIS45
|
4.1
|
124.2
|
1.0
|
CA
|
A:HIS45
|
4.2
|
109.6
|
1.0
|
CA
|
A:CYS23
|
4.2
|
121.8
|
1.0
|
CA
|
A:CYS20
|
4.3
|
147.9
|
1.0
|
CA
|
A:CYS48
|
4.8
|
105.2
|
1.0
|
CD1
|
A:LEU33
|
4.8
|
116.0
|
1.0
|
C
|
A:CYS23
|
4.9
|
129.4
|
1.0
|
C
|
A:CYS20
|
5.0
|
156.4
|
1.0
|
|
Zinc binding site 2 out
of 23 in 8jwu
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Zinc Binding Sites List in 8jwu
Zinc binding site 2 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_02.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn502
b:121.8
occ:1.00
|
ND1
|
A:HIS107
|
2.0
|
103.0
|
1.0
|
SG
|
A:CYS85
|
2.3
|
132.9
|
1.0
|
SG
|
A:CYS88
|
2.3
|
152.2
|
1.0
|
SG
|
A:CYS110
|
2.3
|
126.5
|
1.0
|
CE1
|
A:HIS107
|
2.9
|
124.1
|
1.0
|
CG
|
A:HIS107
|
3.0
|
103.3
|
1.0
|
CB
|
A:CYS85
|
3.1
|
141.8
|
1.0
|
CB
|
A:HIS107
|
3.3
|
113.3
|
1.0
|
CB
|
A:CYS88
|
3.4
|
153.6
|
1.0
|
CB
|
A:CYS110
|
3.5
|
122.7
|
1.0
|
N
|
A:CYS88
|
3.9
|
135.0
|
1.0
|
NE2
|
A:HIS107
|
4.0
|
135.7
|
1.0
|
CD2
|
A:HIS107
|
4.1
|
127.3
|
1.0
|
CA
|
A:CYS88
|
4.2
|
144.6
|
1.0
|
N
|
A:HIS107
|
4.4
|
117.2
|
1.0
|
CB
|
A:VAL87
|
4.5
|
115.1
|
1.0
|
CA
|
A:HIS107
|
4.6
|
109.7
|
1.0
|
CA
|
A:CYS85
|
4.6
|
142.0
|
1.0
|
CA
|
A:CYS110
|
4.8
|
121.5
|
1.0
|
C
|
A:VAL87
|
4.8
|
125.6
|
1.0
|
N
|
A:VAL87
|
4.8
|
134.9
|
1.0
|
C
|
A:CYS88
|
5.0
|
136.7
|
1.0
|
|
Zinc binding site 3 out
of 23 in 8jwu
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Zinc Binding Sites List in 8jwu
Zinc binding site 3 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_03.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn503
b:111.0
occ:1.00
|
ND1
|
A:HIS131
|
2.1
|
134.3
|
1.0
|
SG
|
A:CYS128
|
2.3
|
155.4
|
1.0
|
SG
|
A:CYS102
|
2.3
|
140.2
|
1.0
|
SG
|
A:CYS97
|
2.3
|
121.5
|
1.0
|
CB
|
A:CYS102
|
2.9
|
150.3
|
1.0
|
CG
|
A:HIS131
|
3.1
|
139.4
|
1.0
|
CE1
|
A:HIS131
|
3.1
|
149.0
|
1.0
|
CB
|
A:HIS131
|
3.4
|
132.8
|
1.0
|
CB
|
A:CYS128
|
3.5
|
123.9
|
1.0
|
CB
|
A:CYS97
|
3.5
|
108.2
|
1.0
|
N
|
A:CYS128
|
4.0
|
124.7
|
1.0
|
NE2
|
A:HIS131
|
4.2
|
167.6
|
1.0
|
N
|
A:HIS131
|
4.2
|
148.0
|
1.0
|
CD2
|
A:HIS131
|
4.2
|
153.7
|
1.0
|
CA
|
A:CYS128
|
4.3
|
108.2
|
1.0
|
CA
|
A:HIS131
|
4.4
|
136.1
|
1.0
|
CB
|
A:ASN99
|
4.4
|
122.0
|
1.0
|
CA
|
A:CYS102
|
4.4
|
134.5
|
1.0
|
O
|
A:HIS131
|
4.6
|
153.1
|
1.0
|
CB
|
A:GLN104
|
4.8
|
126.9
|
1.0
|
CG
|
A:GLN104
|
4.8
|
138.0
|
1.0
|
CA
|
A:CYS97
|
4.8
|
119.1
|
1.0
|
ND2
|
A:ASN99
|
4.9
|
126.1
|
1.0
|
|
Zinc binding site 4 out
of 23 in 8jwu
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Zinc Binding Sites List in 8jwu
Zinc binding site 4 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_04.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn504
b:139.7
occ:1.00
|
ND1
|
A:HIS173
|
2.1
|
111.0
|
1.0
|
SG
|
A:CYS150
|
2.3
|
144.2
|
1.0
|
SG
|
A:CYS176
|
2.3
|
112.8
|
1.0
|
SG
|
A:CYS147
|
2.3
|
116.5
|
1.0
|
CB
|
A:CYS147
|
2.7
|
107.8
|
1.0
|
CG
|
A:HIS173
|
2.9
|
122.6
|
1.0
|
CE1
|
A:HIS173
|
3.1
|
137.6
|
1.0
|
CB
|
A:CYS150
|
3.1
|
140.2
|
1.0
|
CB
|
A:HIS173
|
3.2
|
135.6
|
1.0
|
CB
|
A:CYS176
|
3.4
|
110.9
|
1.0
|
N
|
A:HIS173
|
3.8
|
113.2
|
1.0
|
N
|
A:CYS150
|
3.8
|
106.0
|
1.0
|
CD2
|
A:HIS173
|
4.1
|
120.7
|
1.0
|
CA
|
A:HIS173
|
4.1
|
114.1
|
1.0
|
CA
|
A:CYS150
|
4.1
|
129.6
|
1.0
|
NE2
|
A:HIS173
|
4.1
|
132.2
|
1.0
|
CA
|
A:CYS147
|
4.2
|
111.6
|
1.0
|
O
|
A:CYS147
|
4.5
|
139.9
|
1.0
|
C
|
A:CYS147
|
4.6
|
113.0
|
1.0
|
CA
|
A:CYS176
|
4.8
|
120.3
|
1.0
|
CB
|
A:LEU149
|
4.8
|
124.2
|
1.0
|
C
|
A:LEU149
|
4.9
|
118.7
|
1.0
|
C
|
A:TYR172
|
4.9
|
102.3
|
1.0
|
O
|
A:HIS173
|
4.9
|
89.4
|
1.0
|
C
|
A:CYS150
|
5.0
|
143.2
|
1.0
|
N
|
A:CYS147
|
5.0
|
138.7
|
1.0
|
C
|
A:HIS173
|
5.0
|
95.1
|
1.0
|
|
Zinc binding site 5 out
of 23 in 8jwu
Go back to
Zinc Binding Sites List in 8jwu
Zinc binding site 5 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_05.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn505
b:117.5
occ:1.00
|
SG
|
A:CYS194
|
2.3
|
152.6
|
1.0
|
SG
|
A:CYS191
|
2.3
|
122.6
|
1.0
|
SG
|
A:CYS167
|
2.3
|
155.3
|
1.0
|
SG
|
A:CYS166
|
2.3
|
136.0
|
1.0
|
N
|
A:CYS167
|
3.0
|
149.7
|
1.0
|
CB
|
A:CYS167
|
3.2
|
136.9
|
1.0
|
CB
|
A:CYS194
|
3.2
|
119.2
|
1.0
|
CB
|
A:CYS191
|
3.2
|
111.6
|
1.0
|
CB
|
A:CYS166
|
3.4
|
130.4
|
1.0
|
CA
|
A:CYS167
|
3.5
|
139.2
|
1.0
|
O
|
A:CYS167
|
3.5
|
158.6
|
1.0
|
N
|
A:CYS194
|
3.7
|
119.0
|
1.0
|
C
|
A:CYS166
|
3.8
|
159.6
|
1.0
|
C
|
A:CYS167
|
3.9
|
159.8
|
1.0
|
CA
|
A:CYS194
|
4.0
|
123.4
|
1.0
|
CA
|
A:CYS166
|
4.2
|
137.9
|
1.0
|
CB
|
A:ASN196
|
4.4
|
113.1
|
1.0
|
OG
|
A:SER164
|
4.5
|
129.9
|
1.0
|
O
|
A:CYS166
|
4.6
|
173.0
|
1.0
|
C
|
A:CYS194
|
4.7
|
137.5
|
1.0
|
CA
|
A:CYS191
|
4.7
|
104.0
|
1.0
|
N
|
A:ASN196
|
4.9
|
121.5
|
1.0
|
CB
|
A:GLN193
|
4.9
|
109.5
|
1.0
|
N
|
A:ASN195
|
4.9
|
140.3
|
1.0
|
C
|
A:GLN193
|
4.9
|
122.2
|
1.0
|
|
Zinc binding site 6 out
of 23 in 8jwu
Go back to
Zinc Binding Sites List in 8jwu
Zinc binding site 6 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_06.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn506
b:180.4
occ:1.00
|
SG
|
A:CYS284
|
2.3
|
272.7
|
1.0
|
SG
|
A:CYS263
|
2.3
|
197.1
|
1.0
|
SG
|
A:CYS287
|
2.3
|
182.5
|
1.0
|
SG
|
A:CYS260
|
2.3
|
214.4
|
1.0
|
CB
|
A:CYS263
|
3.2
|
206.4
|
1.0
|
CB
|
A:CYS287
|
3.3
|
213.3
|
1.0
|
CB
|
A:CYS284
|
3.4
|
248.7
|
1.0
|
CB
|
A:CYS260
|
3.4
|
205.7
|
1.0
|
N
|
A:CYS263
|
3.5
|
201.5
|
1.0
|
N
|
A:CYS284
|
3.7
|
245.4
|
1.0
|
CA
|
A:CYS263
|
3.9
|
197.8
|
1.0
|
CA
|
A:CYS284
|
4.1
|
246.8
|
1.0
|
CB
|
A:THR262
|
4.1
|
179.7
|
1.0
|
N
|
A:CYS287
|
4.3
|
219.0
|
1.0
|
CD2
|
A:HIS266
|
4.3
|
197.0
|
1.0
|
CA
|
A:CYS287
|
4.4
|
210.2
|
1.0
|
C
|
A:THR262
|
4.5
|
178.0
|
1.0
|
OE1
|
A:GLU286
|
4.7
|
199.6
|
1.0
|
N
|
A:GLY264
|
4.7
|
181.4
|
1.0
|
CA
|
A:THR262
|
4.7
|
171.4
|
1.0
|
C
|
A:CYS284
|
4.7
|
250.2
|
1.0
|
CB
|
A:HIS266
|
4.7
|
180.4
|
1.0
|
N
|
A:THR262
|
4.8
|
175.8
|
1.0
|
C
|
A:CYS263
|
4.8
|
186.4
|
1.0
|
O
|
A:CYS284
|
4.8
|
257.6
|
1.0
|
CG2
|
A:THR262
|
4.8
|
163.6
|
1.0
|
CA
|
A:CYS260
|
4.8
|
200.4
|
1.0
|
C
|
A:GLU283
|
4.9
|
221.9
|
1.0
|
CG
|
A:HIS266
|
4.9
|
194.6
|
1.0
|
OG1
|
A:THR262
|
5.0
|
193.6
|
1.0
|
|
Zinc binding site 7 out
of 23 in 8jwu
Go back to
Zinc Binding Sites List in 8jwu
Zinc binding site 7 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_07.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn507
b:275.6
occ:1.00
|
ND1
|
A:HIS269
|
2.1
|
228.8
|
1.0
|
SG
|
A:CYS240
|
2.3
|
281.2
|
1.0
|
SG
|
A:CYS272
|
2.3
|
288.7
|
1.0
|
SG
|
A:CYS235
|
2.3
|
288.0
|
1.0
|
N
|
A:HIS269
|
2.6
|
229.7
|
1.0
|
CG
|
A:HIS269
|
3.0
|
227.4
|
1.0
|
CE1
|
A:HIS269
|
3.1
|
222.3
|
1.0
|
CB
|
A:CYS235
|
3.1
|
285.8
|
1.0
|
CB
|
A:HIS269
|
3.2
|
227.8
|
1.0
|
CB
|
A:CYS272
|
3.3
|
268.3
|
1.0
|
CB
|
A:CYS240
|
3.4
|
264.5
|
1.0
|
CA
|
A:HIS269
|
3.5
|
224.7
|
1.0
|
CA
|
A:CYS240
|
3.9
|
264.7
|
1.0
|
N
|
A:LEU241
|
3.9
|
250.7
|
1.0
|
CD2
|
A:HIS269
|
4.1
|
228.7
|
1.0
|
NE2
|
A:HIS269
|
4.1
|
224.8
|
1.0
|
C
|
A:CYS240
|
4.4
|
271.0
|
1.0
|
C
|
A:HIS269
|
4.5
|
233.2
|
1.0
|
CA
|
A:CYS235
|
4.6
|
279.4
|
1.0
|
O
|
A:HIS269
|
4.6
|
237.3
|
1.0
|
N
|
A:TYR242
|
4.7
|
243.9
|
1.0
|
CA
|
A:CYS272
|
4.7
|
277.2
|
1.0
|
CA
|
A:LEU241
|
5.0
|
245.4
|
1.0
|
|
Zinc binding site 8 out
of 23 in 8jwu
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Zinc Binding Sites List in 8jwu
Zinc binding site 8 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_08.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn508
b:111.4
occ:1.00
|
OD1
|
A:ASP213
|
2.0
|
98.0
|
1.0
|
OD1
|
B:ASP213
|
2.0
|
108.4
|
1.0
|
NE2
|
B:HIS187
|
2.3
|
107.6
|
1.0
|
NE2
|
A:HIS187
|
2.3
|
124.0
|
1.0
|
CG
|
B:ASP213
|
2.7
|
115.7
|
1.0
|
CG
|
A:ASP213
|
2.8
|
109.0
|
1.0
|
OD2
|
B:ASP213
|
2.8
|
124.1
|
1.0
|
OD2
|
A:ASP213
|
2.9
|
123.2
|
1.0
|
CD2
|
A:HIS187
|
3.0
|
109.8
|
1.0
|
CE1
|
B:HIS187
|
3.3
|
124.3
|
1.0
|
CD2
|
B:HIS187
|
3.3
|
98.8
|
1.0
|
CE1
|
A:HIS187
|
3.4
|
128.4
|
1.0
|
CB
|
B:ASP213
|
4.2
|
117.7
|
1.0
|
CB
|
A:ASP213
|
4.2
|
116.7
|
1.0
|
CG
|
A:HIS187
|
4.2
|
104.6
|
1.0
|
ND1
|
B:HIS187
|
4.4
|
118.5
|
1.0
|
ND1
|
A:HIS187
|
4.4
|
122.2
|
1.0
|
CG
|
B:HIS187
|
4.4
|
99.7
|
1.0
|
CA
|
B:ASP213
|
4.7
|
106.8
|
1.0
|
CA
|
A:ASP213
|
4.8
|
93.9
|
1.0
|
CG
|
A:LYS186
|
4.9
|
120.9
|
1.0
|
C
|
B:ASP213
|
5.0
|
104.6
|
1.0
|
|
Zinc binding site 9 out
of 23 in 8jwu
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Zinc Binding Sites List in 8jwu
Zinc binding site 9 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_09.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn501
b:204.0
occ:1.00
|
ND1
|
B:HIS45
|
2.1
|
190.3
|
1.0
|
SG
|
B:CYS23
|
2.3
|
177.4
|
1.0
|
SG
|
B:CYS20
|
2.3
|
200.9
|
1.0
|
SG
|
B:CYS48
|
2.3
|
174.4
|
1.0
|
CB
|
B:CYS20
|
2.7
|
193.3
|
1.0
|
CG
|
B:HIS45
|
2.9
|
177.2
|
1.0
|
CE1
|
B:HIS45
|
3.1
|
190.4
|
1.0
|
CB
|
B:HIS45
|
3.2
|
192.9
|
1.0
|
CB
|
B:CYS23
|
3.3
|
198.7
|
1.0
|
CB
|
B:CYS48
|
3.4
|
183.8
|
1.0
|
N
|
B:CYS23
|
4.0
|
203.7
|
1.0
|
N
|
B:HIS45
|
4.0
|
210.9
|
1.0
|
CD2
|
B:HIS45
|
4.0
|
168.4
|
1.0
|
NE2
|
B:HIS45
|
4.1
|
179.6
|
1.0
|
CA
|
B:CYS20
|
4.2
|
195.9
|
1.0
|
CA
|
B:CYS23
|
4.2
|
211.5
|
1.0
|
CA
|
B:HIS45
|
4.2
|
196.9
|
1.0
|
CA
|
B:CYS48
|
4.8
|
176.3
|
1.0
|
O
|
B:GLN25
|
4.9
|
193.3
|
1.0
|
C
|
B:CYS23
|
5.0
|
212.4
|
1.0
|
C
|
B:CYS20
|
5.0
|
194.8
|
1.0
|
|
Zinc binding site 10 out
of 23 in 8jwu
Go back to
Zinc Binding Sites List in 8jwu
Zinc binding site 10 out
of 23 in the Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_10.jpg) Mono view
![](/pictures/ZN/pdb/jw/8jwu-ZN-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Phd Finger Protein 7 (PHF7) Fused to UBE2D2 Via A (Gsgg)3 Linker within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn502
b:289.4
occ:1.00
|
ND1
|
B:HIS107
|
2.2
|
259.4
|
1.0
|
SG
|
B:CYS85
|
2.3
|
316.4
|
1.0
|
SG
|
B:CYS88
|
2.3
|
272.7
|
1.0
|
SG
|
B:CYS110
|
2.3
|
281.0
|
1.0
|
CE1
|
B:HIS107
|
3.0
|
247.3
|
1.0
|
CG
|
B:HIS107
|
3.0
|
262.0
|
1.0
|
CB
|
B:CYS85
|
3.0
|
307.8
|
1.0
|
CB
|
B:HIS107
|
3.4
|
262.5
|
1.0
|
CB
|
B:CYS88
|
3.6
|
252.5
|
1.0
|
CB
|
B:CYS110
|
3.7
|
248.5
|
1.0
|
NE2
|
B:HIS107
|
4.0
|
243.0
|
1.0
|
CD2
|
B:HIS107
|
4.0
|
253.4
|
1.0
|
N
|
B:HIS107
|
4.4
|
262.7
|
1.0
|
CA
|
B:CYS85
|
4.4
|
311.9
|
1.0
|
CA
|
B:HIS107
|
4.5
|
256.7
|
1.0
|
N
|
B:CYS85
|
4.7
|
318.2
|
1.0
|
N
|
B:CYS88
|
4.7
|
246.2
|
1.0
|
CA
|
B:CYS88
|
4.7
|
245.3
|
1.0
|
|
Reference:
H.S.Lee,
I.Bang,
J.You,
T.K.Jeong,
C.R.Kim,
M.Hwang,
J.S.Kim,
S.H.Baek,
J.J.Song,
H.J.Choi.
Molecular Basis For PHF7-Mediated Ubiquitination of Histone H3. Genes Dev. 2023.
ISSN: ISSN 0890-9369
PubMed: 37993255
DOI: 10.1101/GAD.350989.123
Page generated: Thu Dec 28 13:23:42 2023
|