Zinc in PDB 8jij: Alanine Decarboxylase

The structure of Alanine Decarboxylase, PDB code: 8jij was solved by W.Gong, H.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	17.57 / 2.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	163.485, 163.485, 50.203, 90, 90, 120
R / Rfree (%)	17.3 / 22.2

The binding sites of Zinc atom in the Alanine Decarboxylase (pdb code 8jij). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Alanine Decarboxylase, PDB code: 8jij:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Alanine Decarboxylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Alanine Decarboxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:42.9 occ:1.00 ND1 A:HIS477 2.0 44.3 1.0 SG A:CYS462 2.3 36.6 1.0 SG A:CYS474 2.4 45.1 1.0 SG A:CYS472 2.4 44.3 1.0 CE1 A:HIS477 3.0 41.7 1.0 CG A:HIS477 3.0 42.6 1.0 CB A:CYS462 3.3 38.1 1.0 CB A:CYS472 3.4 39.4 1.0 CB A:HIS477 3.4 43.3 1.0 CB A:CYS474 3.5 44.3 1.0 CA A:CYS462 3.5 41.2 1.0 NE2 A:HIS477 4.1 37.1 1.0 CD2 A:HIS477 4.1 39.6 1.0 N A:LEU463 4.1 41.4 1.0 CB A:ALA464 4.1 44.2 1.0 N A:CYS474 4.2 40.4 1.0 C A:CYS462 4.2 41.7 1.0 N A:ALA464 4.2 40.1 1.0 N A:HIS477 4.3 48.3 1.0 CA A:CYS474 4.4 45.2 1.0 CA A:HIS477 4.5 43.2 1.0 CA A:CYS472 4.7 40.0 1.0 N A:CYS462 4.8 41.1 1.0 CA A:ALA464 4.8 41.4 1.0 C A:CYS472 4.8 42.0 1.0

Zinc binding site 2 out of 2 in the Alanine Decarboxylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Alanine Decarboxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:74.4 occ:1.00 NE2 A:HIS380 2.2 42.4 0.5 OD2 A:ASP384 2.8 59.2 1.0 CD2 A:HIS380 2.9 40.0 0.5 O A:HOH711 3.0 40.7 1.0 OD1 A:ASP384 3.1 43.7 1.0 CE1 A:HIS380 3.3 39.4 0.5 CG A:ASP384 3.3 47.4 1.0 NZ A:LYS383 4.1 53.2 1.0 CG A:HIS380 4.1 42.2 0.5 ND1 A:HIS380 4.3 40.4 0.5 ND1 A:HIS380 4.6 36.3 0.5 CB A:ASP384 4.8 44.6 1.0 CE A:LYS383 4.9 47.1 1.0

W.Gong, H.Wang. Crystal Structure of Alanine Decarboxylase To Be Published.