Atomistry » Zinc » PDB 8j56-8jhz » 8je2
Atomistry »
  Zinc »
    PDB 8j56-8jhz »
      8je2 »

Zinc in PDB 8je2: Cryo-Em Structure of Neddylated CUL2-RBX1-Elobc-FEM1B Complexed with FNIP1-Flcn

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Neddylated CUL2-RBX1-Elobc-FEM1B Complexed with FNIP1-Flcn (pdb code 8je2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Neddylated CUL2-RBX1-Elobc-FEM1B Complexed with FNIP1-Flcn, PDB code: 8je2:

Zinc binding site 1 out of 1 in 8je2

Go back to Zinc Binding Sites List in 8je2
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Neddylated CUL2-RBX1-Elobc-FEM1B Complexed with FNIP1-Flcn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Neddylated CUL2-RBX1-Elobc-FEM1B Complexed with FNIP1-Flcn within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn701

b:180.6
occ:1.00
NE2 D:HIS627 1.9 133.2 1.0
SG D:CYS599 2.3 126.9 1.0
CB D:CYS599 2.3 126.9 1.0
CA D:CYS599 2.6 150.5 1.0
NE2 D:HIS565 2.6 127.8 1.0
OD1 D:ASP567 2.8 129.7 1.0
CE1 D:HIS627 2.8 133.2 1.0
CD2 D:HIS627 3.0 133.2 1.0
OD2 D:ASP567 3.1 129.7 1.0
CG D:ASP567 3.3 129.7 1.0
N D:CYS599 3.4 150.5 1.0
CE1 D:HIS565 3.5 127.8 1.0
CD2 D:HIS565 3.5 127.8 1.0
CZ D:PHE623 3.7 124.6 1.0
C D:CYS599 3.8 150.5 1.0
ND1 D:HIS627 3.9 133.2 1.0
CG D:HIS627 4.0 133.2 1.0
CE1 D:PHE623 4.1 124.6 1.0
O D:CYS599 4.1 150.5 1.0
C D:LYS598 4.2 150.5 1.0
O D:LYS598 4.5 150.5 1.0
ND1 D:HIS565 4.6 127.8 1.0
CG D:HIS565 4.6 127.8 1.0
CE2 D:PHE623 4.7 124.6 1.0
CB D:ASP567 4.8 129.7 1.0
N D:LEU600 4.9 150.5 1.0
NH2 D:ARG603 4.9 118.0 1.0

Reference:

Z.Dai, L.Liang, W.Wang, P.Zuo, S.Yu, Y.Liu, X.Zhao, Y.Lu, Y.Jin, F.Zhang, D.Ding, W.Deng, Y.Yin. Structural Insights Into the Ubiquitylation Strategy of the Oligomeric CRL2 FEM1B E3 Ubiquitin Ligase. Embo J. 2024.
ISSN: ESSN 1460-2075
PubMed: 38360992
DOI: 10.1038/S44318-024-00047-Y
Page generated: Thu Oct 31 08:15:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy