Zinc in PDB 8jb5: The Cryo-Em Structure of Paeniclostridium Sordellii Lethal Toxin (Tcsl)

The binding sites of Zinc atom in the The Cryo-Em Structure of Paeniclostridium Sordellii Lethal Toxin (Tcsl) (pdb code 8jb5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Cryo-Em Structure of Paeniclostridium Sordellii Lethal Toxin (Tcsl), PDB code: 8jb5:

Zinc binding site 1 out of 1 in the The Cryo-Em Structure of Paeniclostridium Sordellii Lethal Toxin (Tcsl)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Cryo-Em Structure of Paeniclostridium Sordellii Lethal Toxin (Tcsl) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3000 b:30.0 occ:1.00 SG A:CYS698 2.1 23.7 1.0 NE2 A:HIS757 2.1 23.7 1.0 ND1 A:HIS653 2.1 23.7 1.0 OD1 A:ASP546 2.3 23.7 1.0 CE1 A:HIS653 3.0 23.7 1.0 CG A:ASP546 3.1 23.7 1.0 CD2 A:HIS757 3.1 23.7 1.0 CE1 A:HIS757 3.1 23.7 1.0 OD2 A:ASP546 3.3 23.7 1.0 CG A:HIS653 3.3 23.7 1.0 CB A:CYS698 3.3 23.7 1.0 CB A:HIS653 3.7 23.7 1.0 NE2 A:HIS653 4.1 23.7 1.0 ND1 A:HIS757 4.2 23.7 1.0 CG A:HIS757 4.3 23.7 1.0 CG A:GLU545 4.3 23.7 1.0 CD2 A:HIS653 4.3 23.7 1.0 OE2 A:GLU545 4.4 23.7 1.0 CD A:GLU545 4.4 23.7 1.0 CB A:ASP546 4.5 23.7 1.0 CA A:HIS653 4.5 23.7 1.0 CA A:CYS698 4.6 23.7 1.0 N A:CYS698 4.8 23.7 1.0 N A:ASP546 4.9 23.7 1.0 CD1 A:LEU549 4.9 23.7 1.0 CA A:ASP546 4.9 23.7 1.0

Z.Yao, Z.Xiechao, T.Liang. Structural Dynamics of Crops Control Stability and Toxicity of Paeniclostridium Sordellii Lethal Toxin Nat Commun 2023.
ISSN: ESSN 2041-1723