Zinc in PDB 8j7y: Cryo-Em Structure of HZNT7DELTAHIS-Loop-Fab Complex in Zinc-Bound State, Determined in Outward-Facing Conformation

The binding sites of Zinc atom in the Cryo-Em Structure of HZNT7DELTAHIS-Loop-Fab Complex in Zinc-Bound State, Determined in Outward-Facing Conformation (pdb code 8j7y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of HZNT7DELTAHIS-Loop-Fab Complex in Zinc-Bound State, Determined in Outward-Facing Conformation, PDB code: 8j7y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of HZNT7DELTAHIS-Loop-Fab Complex in Zinc-Bound State, Determined in Outward-Facing Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of HZNT7DELTAHIS-Loop-Fab Complex in Zinc-Bound State, Determined in Outward-Facing Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:180.0 occ:1.00 CG A:ASP74 1.9 155.9 1.0 OD1 A:ASP74 2.0 155.9 1.0 OD2 A:ASP244 2.1 167.3 1.0 OD1 A:ASP244 2.1 167.3 1.0 OD2 A:ASP74 2.1 155.9 1.0 NE2 A:HIS240 2.2 155.5 1.0 CG A:ASP244 2.4 167.3 1.0 CE1 A:HIS240 2.5 155.5 1.0 CB A:ASP74 2.8 155.9 1.0 CD2 A:HIS240 3.3 155.5 1.0 ND1 A:HIS240 3.5 155.5 1.0 CB A:ASP244 3.9 167.3 1.0 CG A:HIS240 3.9 155.5 1.0 CA A:ASP74 4.0 155.9 1.0 O A:HIS240 4.5 155.5 1.0 NE2 A:HIS70 4.6 159.7 1.0 CA A:ASP244 4.8 167.3 1.0 N A:ASP74 4.8 155.9 1.0 CD2 A:HIS70 4.8 159.7 1.0 CE2 A:PHE114 4.9 122.5 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of HZNT7DELTAHIS-Loop-Fab Complex in Zinc-Bound State, Determined in Outward-Facing Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of HZNT7DELTAHIS-Loop-Fab Complex in Zinc-Bound State, Determined in Outward-Facing Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:180.6 occ:1.00 CG B:ASP74 1.9 155.8 1.0 OD1 B:ASP74 2.0 155.8 1.0 OD2 B:ASP244 2.1 167.8 1.0 OD1 B:ASP244 2.1 167.8 1.0 OD2 B:ASP74 2.1 155.8 1.0 NE2 B:HIS240 2.2 156.2 1.0 CG B:ASP244 2.4 167.8 1.0 CE1 B:HIS240 2.5 156.2 1.0 CB B:ASP74 2.8 155.8 1.0 CD2 B:HIS240 3.3 156.2 1.0 ND1 B:HIS240 3.5 156.2 1.0 CB B:ASP244 3.9 167.8 1.0 CG B:HIS240 3.9 156.2 1.0 CA B:ASP74 4.0 155.8 1.0 O B:HIS240 4.5 156.2 1.0 NE2 B:HIS70 4.6 159.4 1.0 CA B:ASP244 4.8 167.8 1.0 N B:ASP74 4.8 155.8 1.0 CD2 B:HIS70 4.8 159.4 1.0 CE2 B:PHE114 4.9 122.6 1.0

H.B.Bui, S.Watanabe, N.Nomura, K.Liu, T.Uemura, M.Inoue, A.Tsutsumi, H.Fujita, K.Kinoshita, Y.Kato, S.Iwata, M.Kikkawa, K.Inaba. Cryo-Em Structures of Human Zinc Transporter ZNT7 Reveal the Mechanism of Zn 2+ Uptake Into the Golgi Apparatus. Nat Commun V. 14 4770 2023.
ISSN: ESSN 2041-1723
PubMed: 37553324
DOI: 10.1038/S41467-023-40521-5