Zinc in PDB 8j6w: Full Length Crystal Structure of Escherichia Coli Fur

The structure of Full Length Crystal Structure of Escherichia Coli Fur, PDB code: 8j6w was solved by F.Zhang, X.Wang, L.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.38 / 2.66
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.222, 69.222, 73.273, 90, 90, 90
R / Rfree (%)	24.1 / 28.9

The binding sites of Zinc atom in the Full Length Crystal Structure of Escherichia Coli Fur (pdb code 8j6w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Full Length Crystal Structure of Escherichia Coli Fur, PDB code: 8j6w:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Full Length Crystal Structure of Escherichia Coli Fur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Full Length Crystal Structure of Escherichia Coli Fur within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:62.8 occ:1.00 OD2 A:ASP89 1.9 57.2 1.0 OE2 A:GLU108 2.1 57.3 1.0 NE2 A:HIS125 2.2 56.5 1.0 NE2 A:HIS87 2.3 60.7 1.0 CG A:ASP89 2.7 56.4 1.0 CD A:GLU108 2.8 55.4 1.0 OE1 A:GLU108 2.8 55.1 1.0 OD1 A:ASP89 2.8 55.4 1.0 CD2 A:HIS125 3.1 54.8 1.0 CD2 A:HIS87 3.1 66.8 1.0 CE1 A:HIS125 3.3 62.1 1.0 CE1 A:HIS87 3.4 63.8 1.0 CB A:ASP89 4.1 56.7 1.0 CG A:GLU108 4.2 50.2 1.0 CG A:HIS125 4.3 55.4 1.0 OE1 A:GLN111 4.3 55.0 1.0 CG A:HIS87 4.3 65.9 1.0 ND1 A:HIS125 4.4 58.6 1.0 ND1 A:HIS87 4.4 70.5 1.0 O A:HIS88 4.7 65.6 1.0 C A:HIS88 4.7 62.9 1.0 N A:ASP89 4.7 62.2 1.0 CA A:ASP89 4.8 59.9 1.0 NE2 A:GLN111 4.9 54.6 1.0

Zinc binding site 2 out of 4 in the Full Length Crystal Structure of Escherichia Coli Fur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Full Length Crystal Structure of Escherichia Coli Fur within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:66.4 occ:1.00 OE1 A:GLU81 1.7 74.6 1.0 NE2 A:HIS33 2.1 60.7 1.0 NE2 A:HIS90 2.2 65.2 1.0 NE2 A:HIS88 2.3 69.4 1.0 CD A:GLU81 2.5 72.8 1.0 OE2 A:GLU81 2.7 77.6 1.0 CD2 A:HIS33 3.1 59.4 1.0 CD2 A:HIS90 3.1 64.5 1.0 CE1 A:HIS33 3.1 68.0 1.0 CD2 A:HIS88 3.2 69.2 1.0 CE1 A:HIS90 3.3 70.2 1.0 CE1 A:HIS88 3.3 76.8 1.0 CG A:GLU81 3.9 66.0 1.0 ND1 A:HIS33 4.1 65.7 1.0 CG A:HIS33 4.2 60.8 1.0 CG A:HIS90 4.3 69.0 1.0 ND1 A:HIS90 4.3 76.4 1.0 CG A:HIS88 4.3 69.4 1.0 CB A:GLU81 4.4 68.1 1.0 ND1 A:HIS88 4.4 77.0 1.0 OE1 A:GLN85 4.9 89.0 1.0

Zinc binding site 3 out of 4 in the Full Length Crystal Structure of Escherichia Coli Fur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Full Length Crystal Structure of Escherichia Coli Fur within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:64.2 occ:1.00 OD1 A:ASP95 2.0 63.3 1.0 ND1 A:HIS132 2.2 55.6 1.0 CG A:ASP95 2.7 63.0 1.0 OD2 A:ASP95 2.8 60.4 1.0 CE1 A:HIS132 3.2 57.1 1.0 CG A:HIS132 3.2 60.0 1.0 CB A:HIS132 3.5 60.3 1.0 CB A:ASP95 4.2 59.4 1.0 NE2 A:HIS132 4.3 61.1 1.0 CD2 A:HIS132 4.3 56.8 1.0 CA A:HIS132 4.5 58.8 1.0 CA A:ASP95 4.8 59.8 1.0 N A:ASP95 5.0 61.0 1.0

Zinc binding site 4 out of 4 in the Full Length Crystal Structure of Escherichia Coli Fur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Full Length Crystal Structure of Escherichia Coli Fur within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:62.8 occ:1.00 NE2 A:HIS145 2.1 60.6 1.0 SG A:CYS93 2.3 55.8 1.0 SG A:CYS138 2.3 66.4 1.0 SG A:CYS96 2.3 60.3 1.0 CE1 A:HIS145 3.0 61.5 1.0 CB A:CYS138 3.0 73.5 1.0 CB A:CYS93 3.2 55.4 1.0 CD2 A:HIS145 3.2 60.4 1.0 CB A:CYS96 3.2 59.6 1.0 N A:CYS96 3.8 71.7 1.0 CA A:CYS96 4.1 62.6 1.0 ND1 A:HIS145 4.2 65.2 1.0 CG A:HIS145 4.3 59.9 1.0 CA A:CYS138 4.4 76.8 1.0 CB A:CYS133 4.5 71.5 1.0 CA A:CYS93 4.5 58.2 1.0 CB A:ASP95 4.7 59.4 1.0 C A:CYS138 4.7 73.6 1.0 C A:CYS96 4.8 65.1 1.0 C A:ASP95 4.8 65.6 1.0 C A:CYS93 4.9 62.1 1.0 O A:CYS138 4.9 73.6 1.0 N A:ASP95 4.9 61.0 1.0 CB A:LYS98 4.9 59.6 1.0 N A:GLY97 4.9 63.7 1.0 O A:CYS93 5.0 61.7 1.0

F.Zhang, X.Wang. Full Length Crystal Structure of Escherichia Coli Fur To Be Published.