Zinc in PDB 8j6m: SIDT1 Protein

The structure of SIDT1 Protein also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Zinc atom in the SIDT1 Protein (pdb code 8j6m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the SIDT1 Protein, PDB code: 8j6m:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the SIDT1 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of SIDT1 Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn905 b:83.5 occ:1.00 OD1 B:ASP574 1.9 57.8 1.0 NE2 B:HIS795 2.1 42.8 1.0 NE2 B:HIS563 2.1 43.4 1.0 NE2 B:HIS791 2.2 40.9 1.0 CG B:ASP574 2.6 58.0 1.0 OD2 B:ASP574 2.7 57.2 1.0 CE1 B:HIS795 2.7 39.4 1.0 CD2 B:HIS791 3.0 36.8 1.0 CD2 B:HIS563 3.1 39.7 1.0 CE1 B:HIS563 3.1 41.4 1.0 CE1 B:HIS791 3.2 42.3 1.0 CD2 B:HIS795 3.4 33.6 1.0 OG B:SER559 3.5 44.1 1.0 ND1 B:HIS795 3.9 36.2 1.0 CB B:ASP574 4.0 56.3 1.0 CG B:HIS791 4.1 37.6 1.0 ND1 B:HIS563 4.2 39.2 1.0 ND1 B:HIS791 4.2 44.0 1.0 CG B:HIS563 4.3 40.9 1.0 CG B:HIS795 4.3 30.9 1.0 CE2 B:TYR562 4.4 50.7 1.0 CD2 B:TYR562 4.5 48.0 1.0 CD1 B:TRP794 4.7 31.3 1.0 CA B:ASP574 4.7 51.7 1.0 NE1 B:TRP794 4.7 39.5 1.0 CB B:SER559 4.9 37.9 1.0 O B:ASP574 4.9 64.5 1.0

Zinc binding site 2 out of 2 in the SIDT1 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of SIDT1 Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:85.2 occ:1.00 NE2 A:HIS791 2.1 39.9 1.0 NE2 A:HIS795 2.1 40.1 1.0 NE2 A:HIS563 2.3 42.3 1.0 OD1 A:ASP574 2.3 60.1 1.0 OD2 A:ASP574 2.5 57.0 1.0 CE1 A:HIS795 2.6 37.6 1.0 CG A:ASP574 2.7 58.5 1.0 CD2 A:HIS791 2.9 33.8 1.0 CE1 A:HIS563 3.2 40.5 1.0 CE1 A:HIS791 3.2 41.5 1.0 CD2 A:HIS563 3.3 37.9 1.0 CD2 A:HIS795 3.4 31.2 1.0 OG A:SER559 3.6 41.2 1.0 ND1 A:HIS795 3.9 34.8 1.0 CG A:HIS791 4.0 35.3 1.0 ND1 A:HIS791 4.2 44.0 1.0 CB A:ASP574 4.2 54.6 1.0 CG A:HIS795 4.3 29.8 1.0 ND1 A:HIS563 4.3 37.2 1.0 CG A:HIS563 4.4 38.0 1.0 CD2 A:TYR562 4.4 46.4 1.0 CE2 A:TYR562 4.6 51.8 1.0 CD1 A:TRP794 4.7 27.8 1.0 NE1 A:TRP794 4.7 38.0 1.0 CB A:SER559 4.9 37.0 1.0

J.T.Zhang, D.H.Jiang. SIDT1 Protein To Be Published.