Zinc in PDB 8ipz: Crystal Structure of Insulin Detemir

The structure of Crystal Structure of Insulin Detemir, PDB code: 8ipz was solved by H.Demirci, E.Ayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.77 / 1.40
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	78.874, 78.874, 79.282, 90, 90, 120
R / Rfree (%)	19.2 / 23

The structure of Crystal Structure of Insulin Detemir also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of Insulin Detemir (pdb code 8ipz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Insulin Detemir, PDB code: 8ipz:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Insulin Detemir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Insulin Detemir within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn102 b:16.9 occ:0.33 NE2 B:HIS10 2.2 12.1 1.0 CL B:CL103 2.2 19.1 0.4 CE1 B:HIS10 3.1 18.4 1.0 CD2 B:HIS10 3.2 14.2 1.0 ND1 B:HIS10 4.2 20.2 1.0 CG B:HIS10 4.3 11.4 1.0 O B:HOH230 4.4 41.6 0.3 CB B:LEU6 4.7 12.1 1.0 O B:HOH204 4.8 33.0 1.0 O B:LEU6 4.9 14.8 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Insulin Detemir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Insulin Detemir within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn102 b:15.8 occ:0.33 CL D:CL103 2.2 17.4 0.3 NE2 D:HIS10 2.2 12.6 1.0 CE1 D:HIS10 3.1 16.0 1.0 CD2 D:HIS10 3.2 15.3 1.0 ND1 D:HIS10 4.3 16.5 1.0 CG D:HIS10 4.3 13.1 1.0 CB D:LEU6 4.8 13.4 1.0 O D:LEU6 4.8 15.5 1.0 O D:HOH205 4.8 29.8 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Insulin Detemir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Insulin Detemir within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn102 b:15.8 occ:0.35 CL F:CL103 2.2 14.2 0.3 NE2 F:HIS10 2.2 13.0 1.0 CE1 F:HIS10 3.2 21.8 1.0 CD2 F:HIS10 3.2 14.0 1.0 O F:HOH223 4.3 32.5 0.3 ND1 F:HIS10 4.3 18.9 1.0 CG F:HIS10 4.3 13.0 1.0 CB F:LEU6 4.9 16.4 1.0 O F:HOH208 4.9 27.6 1.0 O F:LEU6 4.9 14.8 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Insulin Detemir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Insulin Detemir within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn102 b:12.2 occ:0.31 NE2 H:HIS10 2.1 10.2 1.0 CL H:CL103 2.2 12.4 0.3 CE1 H:HIS10 3.1 16.1 1.0 CD2 H:HIS10 3.2 11.6 1.0 ND1 H:HIS10 4.2 14.8 1.0 CG H:HIS10 4.3 10.7 1.0 CB H:LEU6 4.8 12.6 1.0 O H:LEU6 4.9 12.4 1.0 O H:HOH201 5.0 28.4 1.0

H.Demirci, E.Ayan. Crystal Structure of Insulin Detemir To Be Published.