Zinc in PDB 8im5: Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form

All present enzymatic activity of Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form:
2.3.2.31;

The binding sites of Zinc atom in the Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form (pdb code 8im5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form, PDB code: 8im5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:0.0 occ:1.00 SG A:CYS13 2.3 0.0 1.0 HD2 A:PRO14 2.7 0.0 1.0 HB2 A:CYS30 2.7 0.0 1.0 HB3 A:ARG32 2.7 0.0 1.0 HB2 A:CYS27 2.8 0.0 1.0 HB2 A:ARG32 2.8 0.0 1.0 HB2 A:CYS13 2.8 0.0 1.0 ZN A:ZN102 3.0 0.0 1.0 HB3 A:CYS27 3.0 0.0 1.0 CB A:CYS13 3.1 0.0 1.0 CB A:ARG32 3.2 0.0 1.0 H A:ARG32 3.3 0.0 1.0 CB A:CYS27 3.3 0.0 1.0 HZ3 A:TRP11 3.3 0.0 1.0 H A:GLY15 3.4 0.0 1.0 HA A:CYS13 3.6 0.0 1.0 HH2 A:TRP11 3.6 0.0 1.0 CB A:CYS30 3.7 0.0 1.0 CD A:PRO14 3.7 0.0 1.0 SG A:CYS27 3.8 0.0 1.0 CA A:CYS13 3.8 0.0 1.0 HD2 A:ARG32 3.9 0.0 1.0 SG A:CYS30 4.0 0.0 1.0 HG2 A:PRO14 4.0 0.0 1.0 HB3 A:CYS13 4.0 0.0 1.0 HD3 A:ARG32 4.0 0.0 1.0 N A:ARG32 4.1 0.0 1.0 CZ3 A:TRP11 4.1 0.0 1.0 H A:CYS30 4.2 0.0 1.0 HB3 A:CYS30 4.2 0.0 1.0 CA A:ARG32 4.2 0.0 1.0 N A:PRO14 4.3 0.0 1.0 CH2 A:TRP11 4.3 0.0 1.0 CD A:ARG32 4.3 0.0 1.0 N A:GLY15 4.3 0.0 1.0 CG A:ARG32 4.3 0.0 1.0 HA3 A:GLY15 4.3 0.0 1.0 C A:CYS13 4.4 0.0 1.0 H A:CYS31 4.4 0.0 1.0 HD3 A:PRO14 4.4 0.0 1.0 CG A:PRO14 4.4 0.0 1.0 H A:CYS27 4.4 0.0 1.0 O A:ARG32 4.6 0.0 1.0 HG2 A:ARG32 4.7 0.0 1.0 H A:CYS16 4.7 0.0 1.0 CA A:CYS30 4.7 0.0 1.0 CA A:CYS27 4.7 0.0 1.0 N A:CYS31 4.8 0.0 1.0 N A:CYS30 4.8 0.0 1.0 CA A:GLY15 4.9 0.0 1.0 C A:ARG32 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Mouse HOIL1-L Nzf Domain in the Free Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:0.0 occ:1.00 SG A:CYS13 2.1 0.0 1.0 SG A:CYS16 2.5 0.0 1.0 SG A:CYS30 2.5 0.0 1.0 SG A:CYS27 2.5 0.0 1.0 HB2 A:MET29 2.7 0.0 1.0 H A:CYS30 2.7 0.0 1.0 ZN A:ZN101 3.0 0.0 1.0 HB2 A:CYS30 3.0 0.0 1.0 CB A:CYS13 3.3 0.0 1.0 CB A:CYS30 3.3 0.0 1.0 N A:CYS30 3.3 0.0 1.0 HB3 A:CYS13 3.4 0.0 1.0 HB3 A:CYS27 3.4 0.0 1.0 HB2 A:CYS13 3.4 0.0 1.0 CB A:CYS27 3.5 0.0 1.0 CB A:MET29 3.7 0.0 1.0 HB2 A:CYS27 3.8 0.0 1.0 HB3 A:MET29 3.8 0.0 1.0 H A:CYS16 3.9 0.0 1.0 CA A:CYS30 3.9 0.0 1.0 CB A:CYS16 4.0 0.0 1.0 H A:MET29 4.0 0.0 1.0 N A:CYS16 4.0 0.0 1.0 HA3 A:GLY15 4.1 0.0 1.0 O A:CYS16 4.1 0.0 1.0 C A:MET29 4.1 0.0 1.0 HB2 A:PHE18 4.2 0.0 1.0 H A:CYS31 4.2 0.0 1.0 HB3 A:CYS30 4.2 0.0 1.0 HB3 A:CYS16 4.3 0.0 1.0 HB3 A:PHE18 4.3 0.0 1.0 H A:GLY15 4.3 0.0 1.0 C A:GLY15 4.3 0.0 1.0 CA A:MET29 4.3 0.0 1.0 CA A:CYS16 4.4 0.0 1.0 N A:MET29 4.5 0.0 1.0 CA A:GLY15 4.6 0.0 1.0 HA A:CYS30 4.6 0.0 1.0 CA A:CYS13 4.6 0.0 1.0 HG3 A:MET29 4.7 0.0 1.0 C A:CYS16 4.7 0.0 1.0 N A:GLY15 4.7 0.0 1.0 H A:PHE18 4.7 0.0 1.0 CB A:PHE18 4.8 0.0 1.0 H A:ARG32 4.8 0.0 1.0 CG A:MET29 4.8 0.0 1.0 HB2 A:CYS16 4.8 0.0 1.0 N A:CYS31 4.9 0.0 1.0 HD2 A:PRO14 4.9 0.0 1.0 O A:GLY15 4.9 0.0 1.0 C A:CYS30 4.9 0.0 1.0 C A:CYS13 4.9 0.0 1.0 CA A:CYS27 4.9 0.0 1.0

E.Walinda, K.Sugase, N.Ishii, M.Shirakawa, K.Iwai, D.Morimoto. Solution Structure of the Hoil-1L Nzf Domain Reveals A Conformational Switch Regulating Linear Ubiquitin Affinity J.Biol.Chem. 05165 2023.
ISSN: ESSN 1083-351X
DOI: 10.1016/J.JBC.2023.105165