Zinc in PDB 8hr0: The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif

The structure of The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif, PDB code: 8hr0 was solved by W.F.Ma, Y.N.Nan, M.R.Yang, Y.Q.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.02 / 3.34
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	148.58, 96.203, 130.465, 90, 90.01, 90
R / Rfree (%)	22.3 / 29.9

The binding sites of Zinc atom in the The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif (pdb code 8hr0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif, PDB code: 8hr0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:81.5 occ:1.00 SG A:CYS88 2.3 94.1 1.0 SG A:CYS85 2.3 72.1 1.0 SG A:CYS66 2.4 81.1 1.0 SG A:CYS61 2.8 75.9 1.0 CB A:CYS85 3.2 74.1 1.0 CB A:CYS66 3.3 86.2 1.0 CB A:CYS61 3.4 80.8 1.0 CB A:CYS88 3.6 86.6 1.0 N A:CYS88 4.1 88.3 1.0 CA A:CYS88 4.4 92.4 1.0 CB A:GLN90 4.5 82.0 1.0 CB A:ARG63 4.6 88.2 1.0 N A:ARG67 4.6 82.7 1.0 CA A:CYS85 4.6 77.4 1.0 CA A:CYS66 4.7 90.1 1.0 CB A:PHE87 4.8 77.0 1.0 CD A:ARG63 4.8 87.6 1.0 C A:CYS88 4.8 92.5 1.0 N A:TYR89 4.8 90.9 1.0 CA A:CYS61 4.9 84.1 1.0 N A:ALA68 4.9 73.5 1.0 NE A:ARG63 4.9 83.7 1.0 N A:GLN90 4.9 93.0 1.0 C A:PHE87 5.0 82.6 1.0

Zinc binding site 2 out of 2 in the The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Complex Structure of Copii Coat with Hcov-OC43 Dd Sorting Motif within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:76.4 occ:1.00 SG B:CYS452 2.2 82.3 1.0 SG B:CYS431 2.3 88.0 1.0 SG B:CYS455 2.4 80.0 1.0 CB B:CYS452 3.1 89.5 1.0 CB B:CYS431 3.3 84.9 1.0 CB B:CYS434 3.3 30.0 1.0 CB B:CYS455 3.5 78.0 1.0 N B:CYS455 3.5 81.2 1.0 OG1 B:THR436 3.7 69.1 1.0 CA B:CYS455 3.9 78.9 1.0 C B:CYS455 4.2 77.8 1.0 N B:TYR456 4.4 78.4 1.0 CA B:CYS431 4.4 85.0 1.0 CA B:CYS452 4.5 89.9 1.0 CA B:CYS434 4.6 82.7 1.0 N B:CYS434 4.6 89.7 1.0 N B:ARG457 4.6 93.2 1.0 C B:LEU454 4.7 71.5 1.0 CB B:THR436 4.7 69.6 1.0 CB B:LEU454 4.8 64.0 1.0 CB B:ARG457 4.8 96.0 1.0 O B:CYS455 4.8 81.8 1.0 N B:LEU454 4.9 68.0 1.0 C B:CYS452 4.9 85.8 1.0 O B:CYS452 5.0 86.6 1.0 CA B:LEU454 5.0 70.7 1.0

Y.Q.Li, M.R.Yang, Y.N.Nan, J.M.Wang, J.J.Guo, P.F.He, W.X.Dai, S.Q.Zhou, S.J.Wang, Y.Zhang, W.F.Ma. Tighter Er Retention of Sars-Cov-2 Omicron Spike Caused By A Constellation of Folding Disruptive Mutations To Be Published.