Zinc in PDB 8hmf: Head Module State 2 of Tetrahymena Ift-A
Zinc Binding Sites:
The binding sites of Zinc atom in the Head Module State 2 of Tetrahymena Ift-A
(pdb code 8hmf). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Head Module State 2 of Tetrahymena Ift-A, PDB code: 8hmf:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 8hmf
Go back to
Zinc Binding Sites List in 8hmf
Zinc binding site 1 out
of 2 in the Head Module State 2 of Tetrahymena Ift-A
![](/pictures/ZN/pdb/hm/8hmf-ZN-sphere_01.jpg) Mono view
![](/pictures/ZN/pdb/hm/8hmf-ZN-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Head Module State 2 of Tetrahymena Ift-A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2001
b:254.0
occ:1.00
|
SG
|
A:CYS1044
|
2.3
|
187.5
|
1.0
|
SG
|
A:CYS1047
|
2.3
|
170.7
|
1.0
|
SG
|
A:CYS1060
|
2.3
|
191.2
|
1.0
|
SG
|
A:CYS1063
|
3.1
|
173.2
|
1.0
|
CB
|
A:CYS1047
|
3.1
|
170.7
|
1.0
|
CB
|
A:CYS1044
|
3.2
|
187.5
|
1.0
|
CB
|
A:CYS1060
|
3.5
|
191.2
|
1.0
|
CB
|
A:SER1062
|
3.9
|
185.2
|
1.0
|
N
|
A:CYS1063
|
3.9
|
173.2
|
1.0
|
CB
|
A:CYS1063
|
4.1
|
173.2
|
1.0
|
O
|
A:ASN1045
|
4.2
|
171.0
|
1.0
|
CA
|
A:CYS1063
|
4.5
|
173.2
|
1.0
|
CA
|
A:CYS1047
|
4.5
|
170.7
|
1.0
|
CA
|
A:CYS1044
|
4.6
|
187.5
|
1.0
|
C
|
A:SER1062
|
4.6
|
185.2
|
1.0
|
CA
|
A:SER1062
|
4.6
|
185.2
|
1.0
|
N
|
A:SER1062
|
4.8
|
185.2
|
1.0
|
OG
|
A:SER1062
|
4.8
|
185.2
|
1.0
|
C
|
A:CYS1044
|
4.8
|
187.5
|
1.0
|
CB
|
A:HIS1065
|
4.8
|
168.6
|
1.0
|
N
|
A:CYS1047
|
4.8
|
170.7
|
1.0
|
CA
|
A:CYS1060
|
4.9
|
191.2
|
1.0
|
C
|
A:CYS1063
|
4.9
|
173.2
|
1.0
|
OD1
|
A:ASN1051
|
4.9
|
164.8
|
1.0
|
O
|
A:CYS1044
|
4.9
|
187.5
|
1.0
|
|
Zinc binding site 2 out
of 2 in 8hmf
Go back to
Zinc Binding Sites List in 8hmf
Zinc binding site 2 out
of 2 in the Head Module State 2 of Tetrahymena Ift-A
![](/pictures/ZN/pdb/hm/8hmf-ZN-sphere_02.jpg) Mono view
![](/pictures/ZN/pdb/hm/8hmf-ZN-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Head Module State 2 of Tetrahymena Ift-A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2002
b:194.0
occ:1.00
|
SG
|
A:CYS1213
|
2.3
|
136.6
|
1.0
|
SG
|
A:CYS1232
|
2.3
|
139.4
|
1.0
|
SG
|
A:CYS1210
|
2.3
|
136.7
|
1.0
|
CB
|
A:CYS1210
|
3.0
|
136.7
|
1.0
|
CB
|
A:CYS1235
|
3.4
|
147.3
|
1.0
|
SG
|
A:CYS1235
|
3.4
|
147.3
|
1.0
|
CB
|
A:CYS1232
|
3.5
|
139.4
|
1.0
|
OG1
|
A:THR1215
|
3.7
|
129.2
|
1.0
|
N
|
A:CYS1235
|
3.9
|
147.3
|
1.0
|
CB
|
A:CYS1213
|
3.9
|
136.6
|
1.0
|
OH
|
A:TYR1217
|
4.2
|
129.8
|
1.0
|
CA
|
A:CYS1235
|
4.2
|
147.3
|
1.0
|
N
|
A:CYS1213
|
4.3
|
136.6
|
1.0
|
CE2
|
A:TYR1217
|
4.4
|
129.8
|
1.0
|
CA
|
A:CYS1210
|
4.5
|
136.7
|
1.0
|
CA
|
A:CYS1213
|
4.7
|
136.6
|
1.0
|
CZ
|
A:TYR1217
|
4.8
|
129.8
|
1.0
|
O
|
A:CYS1210
|
4.8
|
136.7
|
1.0
|
CB
|
A:GLU1212
|
4.8
|
135.6
|
1.0
|
C
|
A:CYS1210
|
4.9
|
136.7
|
1.0
|
CA
|
A:CYS1232
|
4.9
|
139.4
|
1.0
|
CB
|
A:PHE1234
|
4.9
|
124.2
|
1.0
|
C
|
A:PHE1234
|
5.0
|
124.2
|
1.0
|
CB
|
A:THR1215
|
5.0
|
129.2
|
1.0
|
N
|
A:PHE1234
|
5.0
|
124.2
|
1.0
|
|
Reference:
Y.Ma,
J.He,
S.Li,
D.Yao,
C.Huang,
J.Wu,
M.Lei.
Structural Insight Into the Intraflagellar Transport Complex Ift-A and Its Assembly in the Anterograde Ift Train. Nat Commun V. 14 1506 2023.
ISSN: ESSN 2041-1723
PubMed: 36932088
DOI: 10.1038/S41467-023-37208-2
Page generated: Fri Jul 28 07:09:59 2023
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