Zinc in PDB 8hmf: Head Module State 2 of Tetrahymena Ift-A

The binding sites of Zinc atom in the Head Module State 2 of Tetrahymena Ift-A (pdb code 8hmf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Head Module State 2 of Tetrahymena Ift-A, PDB code: 8hmf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Head Module State 2 of Tetrahymena Ift-A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Head Module State 2 of Tetrahymena Ift-A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2001 b:254.0 occ:1.00 SG A:CYS1044 2.3 187.5 1.0 SG A:CYS1047 2.3 170.7 1.0 SG A:CYS1060 2.3 191.2 1.0 SG A:CYS1063 3.1 173.2 1.0 CB A:CYS1047 3.1 170.7 1.0 CB A:CYS1044 3.2 187.5 1.0 CB A:CYS1060 3.5 191.2 1.0 CB A:SER1062 3.9 185.2 1.0 N A:CYS1063 3.9 173.2 1.0 CB A:CYS1063 4.1 173.2 1.0 O A:ASN1045 4.2 171.0 1.0 CA A:CYS1063 4.5 173.2 1.0 CA A:CYS1047 4.5 170.7 1.0 CA A:CYS1044 4.6 187.5 1.0 C A:SER1062 4.6 185.2 1.0 CA A:SER1062 4.6 185.2 1.0 N A:SER1062 4.8 185.2 1.0 OG A:SER1062 4.8 185.2 1.0 C A:CYS1044 4.8 187.5 1.0 CB A:HIS1065 4.8 168.6 1.0 N A:CYS1047 4.8 170.7 1.0 CA A:CYS1060 4.9 191.2 1.0 C A:CYS1063 4.9 173.2 1.0 OD1 A:ASN1051 4.9 164.8 1.0 O A:CYS1044 4.9 187.5 1.0

Zinc binding site 2 out of 2 in the Head Module State 2 of Tetrahymena Ift-A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Head Module State 2 of Tetrahymena Ift-A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2002 b:194.0 occ:1.00 SG A:CYS1213 2.3 136.6 1.0 SG A:CYS1232 2.3 139.4 1.0 SG A:CYS1210 2.3 136.7 1.0 CB A:CYS1210 3.0 136.7 1.0 CB A:CYS1235 3.4 147.3 1.0 SG A:CYS1235 3.4 147.3 1.0 CB A:CYS1232 3.5 139.4 1.0 OG1 A:THR1215 3.7 129.2 1.0 N A:CYS1235 3.9 147.3 1.0 CB A:CYS1213 3.9 136.6 1.0 OH A:TYR1217 4.2 129.8 1.0 CA A:CYS1235 4.2 147.3 1.0 N A:CYS1213 4.3 136.6 1.0 CE2 A:TYR1217 4.4 129.8 1.0 CA A:CYS1210 4.5 136.7 1.0 CA A:CYS1213 4.7 136.6 1.0 CZ A:TYR1217 4.8 129.8 1.0 O A:CYS1210 4.8 136.7 1.0 CB A:GLU1212 4.8 135.6 1.0 C A:CYS1210 4.9 136.7 1.0 CA A:CYS1232 4.9 139.4 1.0 CB A:PHE1234 4.9 124.2 1.0 C A:PHE1234 5.0 124.2 1.0 CB A:THR1215 5.0 129.2 1.0 N A:PHE1234 5.0 124.2 1.0

Y.Ma, J.He, S.Li, D.Yao, C.Huang, J.Wu, M.Lei. Structural Insight Into the Intraflagellar Transport Complex Ift-A and Its Assembly in the Anterograde Ift Train. Nat Commun V. 14 1506 2023.
ISSN: ESSN 2041-1723
PubMed: 36932088
DOI: 10.1038/S41467-023-37208-2