Zinc in PDB 8hle: Structure of Dddy-Dmsop Complex

The structure of Structure of Dddy-Dmsop Complex, PDB code: 8hle was solved by M.Peng, C.Y.Li, Y.Z.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.72 / 1.91
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	65.803, 73.387, 87.368, 90, 91.14, 90
R / Rfree (%)	16 / 20.1

The binding sites of Zinc atom in the Structure of Dddy-Dmsop Complex (pdb code 8hle). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Dddy-Dmsop Complex, PDB code: 8hle:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Dddy-Dmsop Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Dddy-Dmsop Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:14.1 occ:1.00 OE2 A:GLU269 2.0 11.6 1.0 NE2 A:HIS265 2.0 9.6 1.0 NE2 A:HIS338 2.1 12.2 1.0 O02 A:LNI502 2.2 16.7 1.0 O01 A:LNI502 2.5 16.1 1.0 C01 A:LNI502 2.7 17.7 1.0 CD A:GLU269 2.8 11.3 1.0 OE1 A:GLU269 3.0 12.6 1.0 CE1 A:HIS265 3.0 13.0 1.0 CE1 A:HIS338 3.0 12.9 1.0 CD2 A:HIS265 3.0 11.3 1.0 CD2 A:HIS338 3.1 12.7 1.0 ND1 A:HIS265 4.1 9.3 1.0 C02 A:LNI502 4.1 23.6 1.0 ND1 A:HIS338 4.1 12.7 1.0 NH2 A:ARG361 4.2 15.2 1.0 CG A:HIS265 4.2 13.2 1.0 CG A:GLU269 4.2 13.6 1.0 CG A:HIS338 4.2 14.2 1.0 CD2 A:PHE332 4.4 12.9 1.0 C03 A:LNI502 4.5 24.2 1.0 CE2 A:PHE332 4.5 12.2 1.0 CB A:GLU269 4.6 11.5 1.0 CB A:HIS263 4.7 19.9 1.0 CE1 A:TYR271 4.7 9.3 1.0 OH A:TYR271 4.7 11.2 1.0

Zinc binding site 2 out of 2 in the Structure of Dddy-Dmsop Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Dddy-Dmsop Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:12.2 occ:1.00 OE2 B:GLU269 1.9 8.7 1.0 O01 B:LNI502 2.0 13.1 1.0 NE2 B:HIS265 2.1 8.6 1.0 NE2 B:HIS338 2.1 9.7 1.0 O02 B:LNI502 2.4 12.6 1.0 C01 B:LNI502 2.5 17.8 1.0 CD B:GLU269 2.8 9.1 1.0 OE1 B:GLU269 3.0 12.3 1.0 CE1 B:HIS338 3.0 10.5 1.0 CE1 B:HIS265 3.1 10.3 1.0 CD2 B:HIS265 3.1 9.3 1.0 CD2 B:HIS338 3.2 10.2 1.0 C02 B:LNI502 4.0 23.1 1.0 NH2 B:ARG361 4.1 13.3 1.0 ND1 B:HIS338 4.1 10.2 1.0 ND1 B:HIS265 4.2 11.6 1.0 CG B:GLU269 4.2 7.5 1.0 CG B:HIS338 4.2 9.9 1.0 CG B:HIS265 4.3 11.5 1.0 CD2 B:PHE332 4.4 8.7 1.0 CE2 B:PHE332 4.5 10.5 1.0 C03 B:LNI502 4.6 28.2 1.0 CB B:HIS263 4.7 15.7 1.0 CB B:GLU269 4.7 10.9 1.0 CE2 B:TYR271 4.8 10.3 1.0 OH B:TYR271 4.8 12.4 1.0 CD2 B:HIS263 4.9 21.0 1.0 NE B:ARG361 5.0 12.3 1.0

Y.Z.Zhang, M.Peng, C.Y.Li. Structure of Dddy-Dmsop Complex at 1.91 Angstroms Resolution. To Be Published.