Zinc in PDB 8hhl: Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Full R-Loop Complex

The structure of Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Full R-Loop Complex also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Full R-Loop Complex (pdb code 8hhl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Full R-Loop Complex, PDB code: 8hhl:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Full R-Loop Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Full R-Loop Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:164.5 occ:1.00 ND1 A:HIS549 2.0 108.0 1.0 SG A:CYS572 2.3 121.9 1.0 SG A:CYS552 2.3 120.6 1.0 SG A:CYS569 2.3 121.0 1.0 CG A:HIS549 2.9 106.8 1.0 CB A:HIS549 3.0 110.0 1.0 CE1 A:HIS549 3.1 105.0 1.0 CB A:CYS569 3.3 117.3 1.0 CB A:CYS572 3.4 122.0 1.0 CB A:CYS552 3.5 117.8 1.0 N A:CYS572 3.6 122.2 1.0 CD2 A:HIS549 4.0 101.9 1.0 CA A:CYS572 4.1 122.3 1.0 NE2 A:HIS549 4.1 102.7 1.0 N A:CYS552 4.5 118.2 1.0 C A:GLY571 4.5 117.9 1.0 CA A:HIS549 4.5 104.0 1.0 CA A:CYS552 4.6 116.9 1.0 N A:GLY571 4.6 119.6 1.0 CA A:GLY571 4.7 116.2 1.0 CA A:CYS569 4.7 116.6 1.0 CB A:HIS554 4.9 118.3 1.0 C A:CYS572 5.0 120.2 1.0

S.Omura, N.S.Omura, R.Nakagawa, Y.W.Wu, C.Sudfeld, V.R.Warren, H.Hirano, T.Kusakizako, Y.Kise, H.G.J.Lebbink, Y.Itoh, V.D.J.Oost, O.Nureki. N/A N/A.