Zinc in PDB 8h5c: Structure of Sars-Cov-2 Omicron Ba.2.75 Rbd in Complex with Human ACE2

The structure of Structure of Sars-Cov-2 Omicron Ba.2.75 Rbd in Complex with Human ACE2, PDB code: 8h5c was solved by Z.N.Zhao, B.Bai, K.F.Liu, J.X.Qi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.04 / 2.90
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	105.769, 105.769, 228.846, 90, 90, 90
R / Rfree (%)	19.7 / 24.2

The binding sites of Zinc atom in the Structure of Sars-Cov-2 Omicron Ba.2.75 Rbd in Complex with Human ACE2 (pdb code 8h5c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Sars-Cov-2 Omicron Ba.2.75 Rbd in Complex with Human ACE2, PDB code: 8h5c:

Zinc binding site 1 out of 1 in the Structure of Sars-Cov-2 Omicron Ba.2.75 Rbd in Complex with Human ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Sars-Cov-2 Omicron Ba.2.75 Rbd in Complex with Human ACE2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:33.8 occ:1.00 OE2 A:GLU402 2.0 38.4 1.0 NE2 A:HIS374 2.1 33.9 1.0 NE2 A:HIS378 2.1 37.4 1.0 CD A:GLU402 2.9 36.7 1.0 CD2 A:HIS374 3.0 32.8 1.0 CD2 A:HIS378 3.1 34.4 1.0 CE1 A:HIS378 3.1 39.6 1.0 OE1 A:GLU402 3.1 32.5 1.0 CE1 A:HIS374 3.1 33.0 1.0 OE2 A:GLU375 3.5 50.0 1.0 ND1 A:HIS378 4.2 38.1 1.0 CG A:HIS378 4.2 31.7 1.0 CG A:HIS374 4.2 38.4 1.0 ND1 A:HIS374 4.2 37.4 1.0 CG A:GLU402 4.3 38.6 1.0 CD A:GLU375 4.4 46.3 1.0 OE1 A:GLU375 4.5 50.2 1.0 CA A:GLU402 5.0 36.4 1.0

Z.N.Zhao, B.Bai, K.F.Liu, J.X.Qi, G.F.Gao. Structure of Sars-Cov-2 Omicron Ba.2.75 Rbd in Complex with Human ACE2 To Be Published.
DOI: 10.1038/S41467-023-39942-Z