Zinc in PDB 8gv3: The Cryo-Em Structure of Gsnor with NYY001

All present enzymatic activity of The Cryo-Em Structure of Gsnor with NYY001:
1.1.1.1; 1.1.1.284;

The binding sites of Zinc atom in the The Cryo-Em Structure of Gsnor with NYY001 (pdb code 8gv3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Cryo-Em Structure of Gsnor with NYY001, PDB code: 8gv3:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the The Cryo-Em Structure of Gsnor with NYY001


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Cryo-Em Structure of Gsnor with NYY001 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:103.9 occ:1.00 SG A:CYS110 2.3 48.0 1.0 SG A:CYS102 2.3 49.3 1.0 SG A:CYS99 2.3 59.5 1.0 SG A:CYS96 2.3 53.4 1.0 CB A:CYS102 3.4 49.3 1.0 CB A:CYS110 3.6 48.0 1.0 CB A:CYS99 3.6 59.5 1.0 CB A:CYS96 3.6 53.4 1.0 N A:GLY97 3.8 59.9 1.0 N A:CYS96 3.8 53.4 1.0 N A:CYS99 3.9 59.5 1.0 CA A:CYS110 4.1 48.0 1.0 CA A:CYS96 4.2 53.4 1.0 N A:GLU98 4.3 66.3 1.0 CA A:CYS99 4.3 59.5 1.0 N A:CYS102 4.4 49.3 1.0 CA A:CYS102 4.4 49.3 1.0 C A:CYS96 4.5 53.4 1.0 N A:GLN111 4.7 47.7 1.0 CA A:GLY97 4.7 59.9 1.0 C A:GLN95 4.9 40.2 1.0 C A:CYS110 4.9 48.0 1.0 C A:GLY97 5.0 59.9 1.0 CB A:LYS112 5.0 46.4 1.0 C A:CYS99 5.0 59.5 1.0

Zinc binding site 2 out of 4 in the The Cryo-Em Structure of Gsnor with NYY001


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Cryo-Em Structure of Gsnor with NYY001 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:100.4 occ:1.00 SG A:CYS173 2.3 47.8 1.0 SG A:CYS44 2.3 59.7 1.0 NE2 A:HIS66 2.3 46.9 1.0 N25 A:WKZ404 2.7 68.5 1.0 CE1 A:HIS66 3.0 46.9 1.0 CB A:CYS173 3.1 47.8 1.0 CB A:CYS44 3.1 59.7 1.0 CD2 A:HIS66 3.5 46.9 1.0 C24 A:WKZ404 3.6 68.5 1.0 C26 A:WKZ404 3.7 68.5 1.0 CG2 A:THR46 4.2 60.1 1.0 ND1 A:HIS66 4.2 46.9 1.0 CG A:HIS66 4.5 46.9 1.0 OE1 A:GLU67 4.5 45.8 1.0 CD A:GLU67 4.5 45.8 1.0 C5N A:NAD403 4.6 62.5 1.0 CA A:CYS173 4.6 47.8 1.0 CA A:CYS44 4.6 59.7 1.0 OE2 A:GLU67 4.7 45.8 1.0 C23 A:WKZ404 4.8 68.5 1.0 N22 A:WKZ404 4.8 68.5 1.0 CG A:GLU67 5.0 45.8 1.0

Zinc binding site 3 out of 4 in the The Cryo-Em Structure of Gsnor with NYY001


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Cryo-Em Structure of Gsnor with NYY001 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:104.3 occ:1.00 SG B:CYS110 2.3 48.6 1.0 SG B:CYS102 2.3 50.9 1.0 SG B:CYS99 2.3 60.8 1.0 SG B:CYS96 2.3 53.5 1.0 CB B:CYS102 3.4 50.9 1.0 CB B:CYS110 3.6 48.6 1.0 CB B:CYS99 3.6 60.8 1.0 CB B:CYS96 3.6 53.5 1.0 N B:GLY97 3.8 61.4 1.0 N B:CYS96 3.8 53.5 1.0 N B:CYS99 3.9 60.8 1.0 CA B:CYS110 4.1 48.6 1.0 CA B:CYS96 4.2 53.5 1.0 N B:GLU98 4.3 67.4 1.0 CA B:CYS99 4.3 60.8 1.0 N B:CYS102 4.4 50.9 1.0 CA B:CYS102 4.4 50.9 1.0 C B:CYS96 4.5 53.5 1.0 N B:GLN111 4.7 48.4 1.0 CA B:GLY97 4.7 61.4 1.0 C B:GLN95 4.8 40.4 1.0 C B:CYS110 4.9 48.6 1.0 C B:GLY97 5.0 61.4 1.0 CB B:LYS112 5.0 46.9 1.0 C B:CYS99 5.0 60.8 1.0

Zinc binding site 4 out of 4 in the The Cryo-Em Structure of Gsnor with NYY001


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Cryo-Em Structure of Gsnor with NYY001 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:99.6 occ:1.00 SG B:CYS173 2.3 47.6 1.0 SG B:CYS44 2.3 60.5 1.0 NE2 B:HIS66 2.3 47.1 1.0 N25 B:WKZ404 2.7 68.8 1.0 CE1 B:HIS66 3.0 47.1 1.0 CB B:CYS173 3.1 47.6 1.0 CB B:CYS44 3.1 60.5 1.0 CD2 B:HIS66 3.5 47.1 1.0 C24 B:WKZ404 3.6 68.8 1.0 C26 B:WKZ404 3.7 68.8 1.0 CG2 B:THR46 4.2 60.1 1.0 ND1 B:HIS66 4.2 47.1 1.0 CG B:HIS66 4.5 47.1 1.0 OE1 B:GLU67 4.5 46.1 1.0 CD B:GLU67 4.5 46.1 1.0 C5N B:NAD403 4.6 62.0 1.0 CA B:CYS173 4.6 47.6 1.0 CA B:CYS44 4.6 60.5 1.0 OE2 B:GLU67 4.7 46.1 1.0 C23 B:WKZ404 4.8 68.8 1.0 N22 B:WKZ404 4.8 68.8 1.0 CG B:GLU67 5.0 46.1 1.0

Y.Cao, Y.Xia. The Cryo-Em Structure of Gsnor with NYY001 To Be Published.