Zinc in PDB 8gui: BRE1-Nucleosome Complex (Model I)

Enzymatic activity of BRE1-Nucleosome Complex (Model I)

All present enzymatic activity of BRE1-Nucleosome Complex (Model I):
2.3.2.27;

Zinc Binding Sites:

The binding sites of Zinc atom in the BRE1-Nucleosome Complex (Model I) (pdb code 8gui). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the BRE1-Nucleosome Complex (Model I), PDB code: 8gui:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 8gui

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Zinc binding site 1 out of 4 in the BRE1-Nucleosome Complex (Model I)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of BRE1-Nucleosome Complex (Model I) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn1001

b:118.9
occ:1.00
 ND1 K:HIS939 2.1 113.9 1.0
SG K:CYS957 2.3 98.4 1.0
SG K:CYS960 2.3 103.5 1.0
SG K:CYS937 2.3 109.2 1.0
CE1 K:HIS939 2.7 113.9 1.0
CB K:CYS937 2.9 109.2 1.0
CB K:CYS957 3.1 98.4 1.0
CG K:HIS939 3.2 113.9 1.0
CB K:CYS960 3.6 103.5 1.0
CB K:HIS939 3.8 113.9 1.0
NE2 K:HIS939 3.9 113.9 1.0
N K:CYS960 4.1 103.5 1.0
NZ K:LYS959 4.1 105.7 1.0
CD2 K:HIS939 4.1 113.9 1.0
CG K:LYS959 4.3 105.7 1.0
CA K:CYS960 4.4 103.5 1.0
CA K:CYS937 4.4 109.2 1.0
CE K:LYS959 4.5 105.7 1.0
CA K:CYS957 4.6 98.4 1.0
CE1 K:PHE941 4.6 116.5 1.0
CD1 K:LEU934 4.6 106.3 1.0
CZ K:PHE941 4.7 116.5 1.0
C K:CYS937 4.8 109.2 1.0
O K:CYS937 4.8 109.2 1.0

Zinc binding site 2 out of 4 in 8gui

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Zinc binding site 2 out of 4 in the BRE1-Nucleosome Complex (Model I)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of BRE1-Nucleosome Complex (Model I) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn1002

b:136.6
occ:1.00
 SG K:CYS945 2.3 109.1 1.0
SG K:CYS942 2.3 117.7 1.0
SG K:CYS922 2.3 129.4 1.0
SG K:CYS925 2.3 128.1 1.0
CB K:CYS922 2.5 129.4 1.0
CB K:CYS925 2.9 128.1 1.0
CB K:CYS945 2.9 109.1 1.0
NH1 K:ARG928 3.0 125.5 1.0
CB K:CYS942 3.5 117.7 1.0
CZ K:ARG928 3.7 125.5 1.0
N K:CYS925 3.8 128.1 1.0
NH2 K:ARG928 4.0 125.5 1.0
SG K:CYS924 4.0 126.1 1.0
CA K:CYS925 4.0 128.1 1.0
CA K:CYS922 4.0 129.4 1.0
CA K:CYS945 4.2 109.1 1.0
N K:CYS942 4.3 117.7 1.0
N K:CYS945 4.4 109.1 1.0
CA K:CYS942 4.4 117.7 1.0
C K:CYS922 4.6 129.4 1.0
O K:CYS922 4.7 129.4 1.0
NE K:ARG928 4.7 125.5 1.0
N K:CYS922 4.8 129.4 1.0
O K:CYS942 4.8 117.7 1.0
N K:ASN926 4.9 129.5 1.0
CG K:ARG928 4.9 125.5 1.0
C K:CYS942 4.9 117.7 1.0
C K:CYS925 4.9 128.1 1.0

Zinc binding site 3 out of 4 in 8gui

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Zinc binding site 3 out of 4 in the BRE1-Nucleosome Complex (Model I)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of BRE1-Nucleosome Complex (Model I) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn1101

b:157.0
occ:1.00
 ND1 L:HIS965 2.1 140.2 1.0
SG L:CYS983 2.3 146.9 1.0
SG L:CYS963 2.3 140.0 1.0
SG L:CYS986 2.3 146.6 1.0
CE1 L:HIS965 2.8 140.2 1.0
CB L:CYS963 2.9 140.0 1.0
N L:CYS986 3.3 146.6 1.0
CB L:CYS986 3.3 146.6 1.0
CG L:HIS965 3.3 140.2 1.0
CB L:CYS983 3.4 146.9 1.0
CB L:LYS985 3.7 144.6 1.0
CA L:CYS986 3.8 146.6 1.0
CB L:HIS965 3.9 140.2 1.0
NE2 L:HIS965 4.0 140.2 1.0
C L:LYS985 4.2 144.6 1.0
O L:CYS963 4.3 140.0 1.0
CA L:CYS963 4.3 140.0 1.0
CD2 L:HIS965 4.3 140.2 1.0
CG L:LYS985 4.3 144.6 1.0
CA L:LYS985 4.4 144.6 1.0
N L:LYS985 4.5 144.6 1.0
C L:CYS986 4.5 146.6 1.0
C L:CYS963 4.5 140.0 1.0
CD1 L:LEU960 4.6 139.3 1.0
CE2 L:PHE967 4.7 146.6 1.0
N L:ASN987 4.7 145.2 1.0
CA L:CYS983 4.8 146.9 1.0
CZ L:PHE967 4.9 146.6 1.0

Zinc binding site 4 out of 4 in 8gui

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Zinc binding site 4 out of 4 in the BRE1-Nucleosome Complex (Model I)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of BRE1-Nucleosome Complex (Model I) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn1102

b:167.3
occ:1.00
 SG L:CYS971 2.3 149.7 1.0
SG L:CYS948 2.3 158.2 1.0
SG L:CYS968 2.3 149.4 1.0
SG L:CYS951 2.3 158.6 1.0
NH1 L:ARG954 2.5 154.6 1.0
CB L:CYS948 2.7 158.2 1.0
CB L:CYS951 3.0 158.6 1.0
CB L:CYS971 3.0 149.7 1.0
CZ L:ARG954 3.3 154.6 1.0
NH2 L:ARG954 3.4 154.6 1.0
CB L:CYS968 3.4 149.4 1.0
N L:CYS951 3.6 158.6 1.0
CA L:CYS951 3.9 158.6 1.0
CA L:CYS948 4.1 158.2 1.0
O L:CYS948 4.2 158.2 1.0
N L:CYS968 4.2 149.4 1.0
CA L:CYS971 4.3 149.7 1.0
CA L:CYS968 4.4 149.4 1.0
C L:CYS948 4.4 158.2 1.0
CB L:CYS950 4.4 158.9 1.0
N L:CYS971 4.4 149.7 1.0
C L:CYS950 4.5 158.9 1.0
NE L:ARG954 4.5 154.6 1.0
O L:ARG954 4.6 154.6 1.0
N L:CYS948 4.7 158.2 1.0
O L:CYS968 4.8 149.4 1.0
CA L:CYS950 4.8 158.9 1.0
N L:CYS950 4.8 158.9 1.0
C L:CYS968 4.9 149.4 1.0
C L:CYS951 5.0 158.6 1.0

Reference:

S.Onishi, K.Uchiyama, K.Sato, C.Okada, S.Kobayashi, K.Hamada, T.Nishizawa, K.Ogata, T.Sengoku. Structure of the Human BRE1 Complex Bound to the Nucleosome To Be Published.
Page generated: Wed Oct 30 21:05:02 2024

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