Atomistry » Zinc » PDB 8gna-8gzq » 8gq6
Atomistry »
  Zinc »
    PDB 8gna-8gzq »
      8gq6 »

Zinc in PDB 8gq6: Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex

Enzymatic activity of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex

All present enzymatic activity of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex:
2.3.2.27; 2.3.2.32;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex (pdb code 8gq6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex, PDB code: 8gq6:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 8gq6

Go back to Zinc Binding Sites List in 8gq6
Zinc binding site 1 out of 6 in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn4001

b:104.2
occ:1.00
 ND1 E:HIS80 2.1 112.2 1.0
SG E:CYS45 2.3 137.7 1.0
SG E:CYS83 2.3 118.1 1.0
SG E:CYS42 2.3 136.0 1.0
CE1 E:HIS80 2.8 112.3 1.0
CB E:CYS42 3.0 136.2 1.0
CB E:CYS45 3.0 137.7 1.0
CG E:HIS80 3.2 112.4 1.0
CB E:CYS83 3.6 117.6 1.0
CB E:HIS80 3.7 112.5 1.0
N E:CYS45 3.7 137.4 1.0
CA E:CYS45 3.9 137.8 1.0
NE2 E:HIS80 4.0 112.3 1.0
CD2 E:HIS80 4.2 112.3 1.0
CB E:CYS53 4.2 143.4 1.0
N E:HIS80 4.3 112.2 1.0
CA E:CYS42 4.5 136.3 1.0
C E:CYS45 4.6 138.1 1.0
CA E:HIS80 4.6 112.5 1.0
N E:ARG46 4.6 138.5 1.0
O E:HIS48 4.7 141.4 1.0
C E:ILE44 4.8 137.0 1.0
CA E:CYS53 4.9 143.5 1.0
CB E:ILE44 4.9 136.6 1.0

Zinc binding site 2 out of 6 in 8gq6

Go back to Zinc Binding Sites List in 8gq6
Zinc binding site 2 out of 6 in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn4002

b:92.5
occ:1.00
 OD2 E:ASP97 2.1 131.3 1.0
SG E:CYS75 2.3 115.9 1.0
ND1 E:HIS77 2.3 113.1 1.0
SG E:CYS94 2.3 129.2 1.0
CB E:CYS94 2.9 130.0 1.0
CG E:ASP97 3.1 131.3 1.0
CE1 E:HIS77 3.2 113.2 1.0
CG E:HIS77 3.3 112.9 1.0
OD1 E:ASP97 3.4 131.1 1.0
CB E:CYS75 3.4 116.0 1.0
CB E:HIS77 3.5 112.9 1.0
CE3 E:TRP101 4.3 129.1 1.0
NE2 E:HIS77 4.3 113.1 1.0
CA E:CYS94 4.4 130.1 1.0
CD2 E:HIS77 4.4 113.0 1.0
CZ3 E:TRP101 4.4 128.8 1.0
CB E:ASP97 4.4 131.3 1.0
CZ3 E:TRP35 4.5 160.4 1.0
CE3 E:TRP35 4.7 160.4 1.0
O E:CYS75 4.7 115.6 1.0
CA E:CYS75 4.7 116.0 1.0
C E:CYS94 4.8 130.2 1.0
CA E:HIS77 4.9 112.9 1.0
O E:CYS94 4.9 130.2 1.0
N E:ASP97 4.9 131.1 1.0
C E:CYS75 5.0 115.6 1.0
N E:HIS77 5.0 113.4 1.0

Zinc binding site 3 out of 6 in 8gq6

Go back to Zinc Binding Sites List in 8gq6
Zinc binding site 3 out of 6 in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn4003

b:104.9
occ:1.00
 ND1 E:HIS82 2.1 115.0 1.0
SG E:CYS56 2.3 146.0 1.0
SG E:CYS68 2.3 133.8 1.0
SG E:CYS53 2.3 143.1 1.0
CE1 E:HIS82 2.8 114.9 1.0
CG E:HIS82 3.0 115.1 1.0
CB E:CYS56 3.1 146.0 1.0
NH1 C:ARG751 3.5 170.4 1.0
CB E:HIS82 3.5 115.4 1.0
CB E:CYS68 3.7 134.2 1.0
CB E:CYS53 3.8 143.4 1.0
NE2 E:HIS82 3.9 114.7 1.0
CD2 E:HIS82 4.0 114.8 1.0
N E:CYS53 4.2 143.3 1.0
CA E:CYS56 4.3 146.0 1.0
N E:CYS56 4.3 145.7 1.0
CA E:CYS68 4.6 134.1 1.0
CA E:CYS53 4.6 143.5 1.0
CZ C:ARG751 4.8 170.4 1.0
C E:GLU55 4.9 145.4 1.0
CA E:HIS82 4.9 115.5 1.0
C E:LEU52 5.0 143.2 1.0

Zinc binding site 4 out of 6 in 8gq6

Go back to Zinc Binding Sites List in 8gq6
Zinc binding site 4 out of 6 in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4001

b:104.2
occ:1.00
 ND1 D:HIS80 2.1 112.2 1.0
CB D:CYS42 2.2 136.2 1.0
SG D:CYS45 2.3 137.7 1.0
SG D:CYS83 2.3 118.1 1.0
SG D:CYS42 2.3 136.0 1.0
CE1 D:HIS80 2.5 112.3 1.0
CB D:CYS45 2.8 137.7 1.0
CG D:HIS80 3.3 112.4 1.0
N D:CYS45 3.4 137.4 1.0
NE2 D:HIS80 3.7 112.3 1.0
CA D:CYS45 3.7 137.8 1.0
CB D:CYS83 3.7 117.6 1.0
CA D:CYS42 3.7 136.3 1.0
CD2 D:HIS80 4.1 112.3 1.0
CB D:HIS80 4.1 112.5 1.0
N D:HIS80 4.2 112.2 1.0
C D:CYS42 4.3 136.2 1.0
C D:CYS45 4.4 138.1 1.0
O D:HIS48 4.4 141.4 1.0
N D:ARG46 4.5 138.5 1.0
N D:CYS42 4.5 136.5 1.0
C D:ILE44 4.5 137.0 1.0
O D:CYS42 4.6 136.3 1.0
CB D:ILE44 4.7 136.6 1.0
CB D:CYS53 4.7 143.4 1.0
N D:ILE44 4.7 136.5 1.0
CA D:HIS80 4.8 112.5 1.0
ND2 D:ASN47 4.9 139.8 1.0
CA D:ILE44 4.9 136.8 1.0

Zinc binding site 5 out of 6 in 8gq6

Go back to Zinc Binding Sites List in 8gq6
Zinc binding site 5 out of 6 in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4002

b:92.5
occ:1.00
 OD2 D:ASP97 2.1 131.3 1.0
SG D:CYS94 2.3 129.2 1.0
ND1 D:HIS77 2.3 113.1 1.0
SG D:CYS75 2.3 115.9 1.0
OD1 D:ASP97 2.6 131.1 1.0
CG D:ASP97 2.7 131.3 1.0
CB D:CYS75 2.7 116.0 1.0
CE1 D:HIS77 3.1 113.2 1.0
CG D:HIS77 3.4 112.9 1.0
CB D:CYS94 3.4 130.0 1.0
CB D:HIS77 3.8 112.9 1.0
O D:CYS75 3.9 115.6 1.0
CA D:CYS75 4.1 116.0 1.0
CB D:ASP97 4.1 131.3 1.0
NE2 D:HIS77 4.3 113.1 1.0
O D:CYS94 4.3 130.2 1.0
C D:CYS75 4.3 115.6 1.0
CD2 D:HIS77 4.4 113.0 1.0
N D:ASP97 4.5 131.1 1.0
CA D:CYS94 4.7 130.1 1.0
CB D:ARG99 4.8 132.2 1.0
N D:HIS77 4.8 113.4 1.0
C D:CYS94 4.9 130.2 1.0
CB D:LEU96 4.9 130.6 1.0
CG D:ARG99 4.9 132.8 1.0
CA D:ASP97 4.9 131.3 1.0
C D:LEU96 4.9 130.8 1.0
CA D:HIS77 4.9 112.9 1.0
N D:CYS75 5.0 116.6 1.0

Zinc binding site 6 out of 6 in 8gq6

Go back to Zinc Binding Sites List in 8gq6
Zinc binding site 6 out of 6 in the Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4003

b:104.9
occ:1.00
 ND1 D:HIS82 2.1 115.0 1.0
SG D:CYS56 2.3 146.0 1.0
SG D:CYS68 2.3 133.8 1.0
SG D:CYS53 2.3 143.1 1.0
CG D:HIS82 2.9 115.1 1.0
CE1 D:HIS82 3.0 114.9 1.0
CB D:HIS82 3.2 115.4 1.0
NH1 F:ARG751 3.2 204.2 1.0
CB D:CYS56 3.4 146.0 1.0
CB D:CYS68 3.4 134.2 1.0
CB D:CYS53 3.7 143.4 1.0
CD2 D:HIS82 3.9 114.8 1.0
NE2 D:HIS82 4.0 114.7 1.0
N D:CYS56 4.3 145.7 1.0
CA D:CYS56 4.3 146.0 1.0
N D:CYS53 4.4 143.3 1.0
CZ F:ARG751 4.5 204.2 1.0
CA D:CYS68 4.6 134.1 1.0
C D:GLU55 4.6 145.4 1.0
CA D:CYS53 4.6 143.5 1.0
CA D:HIS82 4.6 115.5 1.0
O D:GLU55 4.9 145.5 1.0

Reference:

L.Sun, Z.Chen, Y.Hu, Q.Mao. Cryo-Em Structure of the KBTBD2-CUL3-RBX1 Dimeric Complex To Be Published.
Page generated: Thu Dec 28 13:05:38 2023

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy