Zinc in PDB 8gna: Structure of the SBCAS7-11-Crrna-Ntr Complex

The binding sites of Zinc atom in the Structure of the SBCAS7-11-Crrna-Ntr Complex (pdb code 8gna). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the SBCAS7-11-Crrna-Ntr Complex, PDB code: 8gna:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the SBCAS7-11-Crrna-Ntr Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1801 b:70.3 occ:1.00 SG A:CYS503 2.3 45.6 1.0 SG A:CYS501 2.3 47.6 1.0 SG A:CYS491 2.3 43.5 1.0 SG A:CYS506 2.3 40.9 1.0 CB A:CYS506 3.1 40.9 1.0 CB A:CYS501 3.2 47.6 1.0 CB A:CYS491 3.5 43.5 1.0 CB A:CYS503 3.6 45.6 1.0 N A:CYS506 4.2 40.9 1.0 CA A:CYS506 4.3 40.9 1.0 N A:CYS503 4.4 45.6 1.0 CA A:CYS503 4.5 45.6 1.0 CA A:CYS501 4.5 47.6 1.0 CA A:CYS491 4.6 43.5 1.0 N A:CYS491 4.6 43.5 1.0 CG1 A:VAL505 4.6 40.5 1.0 C A:CYS501 4.7 47.6 1.0

Zinc binding site 2 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the SBCAS7-11-Crrna-Ntr Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1802 b:93.9 occ:1.00 SG A:CYS88 2.3 65.9 1.0 SG A:CYS121 2.3 79.4 1.0 SG A:CYS130 2.3 64.8 1.0 SG A:CYS127 2.3 67.2 1.0 CB A:CYS127 3.0 67.2 1.0 CB A:CYS88 3.2 65.9 1.0 CB A:CYS121 3.7 79.4 1.0 N A:CYS127 3.8 67.2 1.0 N A:CYS88 4.0 65.9 1.0 CB A:CYS130 4.0 64.8 1.0 CA A:CYS127 4.0 67.2 1.0 CA A:CYS88 4.2 65.9 1.0 NH1 A:ARG135 4.9 63.7 1.0 C A:CYS88 4.9 65.9 1.0 N A:CYS130 4.9 64.8 1.0 C A:ALA126 4.9 69.6 1.0 CA A:CYS121 5.0 79.4 1.0

Zinc binding site 3 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the SBCAS7-11-Crrna-Ntr Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1803 b:65.9 occ:1.00 ND1 A:HIS747 2.1 57.5 1.0 CE1 A:HIS747 2.1 57.5 1.0 SG A:CYS752 2.3 48.4 1.0 SG A:CYS755 2.3 45.6 1.0 SG A:CYS750 2.3 56.5 1.0 CB A:CYS750 3.1 56.5 1.0 CB A:CYS755 3.2 45.6 1.0 CB A:CYS752 3.3 48.4 1.0 NE2 A:HIS747 3.5 57.5 1.0 CG A:HIS747 3.5 57.5 1.0 N A:CYS752 4.0 48.4 1.0 CD2 A:HIS747 4.1 57.5 1.0 N A:CYS755 4.1 45.6 1.0 CA A:CYS752 4.2 48.4 1.0 CA A:CYS755 4.3 45.6 1.0 NZ A:LYS744 4.4 52.4 1.0 CA A:CYS750 4.4 56.5 1.0 CB A:HIS747 4.4 57.5 1.0 C A:CYS750 4.6 56.5 1.0 CD A:LYS744 4.7 52.4 1.0 N A:THR751 4.9 53.8 1.0 C A:CYS752 4.9 48.4 1.0 O A:CYS750 4.9 56.5 1.0 CA A:HIS747 4.9 57.5 1.0 CE A:LYS744 4.9 52.4 1.0 CE A:MET754 5.0 43.5 1.0

Zinc binding site 4 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the SBCAS7-11-Crrna-Ntr Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1804 b:59.0 occ:1.00 SG A:CYS1018 2.3 41.2 1.0 SG A:CYS1406 2.3 48.8 1.0 SG A:CYS1414 2.3 40.0 1.0 SG A:CYS1417 2.3 35.8 1.0 CB A:CYS1414 3.0 40.0 1.0 CB A:CYS1417 3.4 35.8 1.0 CB A:CYS1018 3.4 41.2 1.0 NH1 A:ARG935 3.5 44.5 1.0 N A:CYS1414 3.7 40.0 1.0 CB A:CYS1406 3.7 48.8 1.0 CA A:CYS1414 3.9 40.0 1.0 N A:CYS1018 4.1 41.2 1.0 N A:CYS1406 4.2 48.8 1.0 CA A:CYS1018 4.3 41.2 1.0 CA A:CYS1406 4.5 48.8 1.0 CZ A:ARG935 4.6 44.5 1.0 CA A:CYS1417 4.7 35.8 1.0 O A:HIS1404 4.7 48.1 1.0 N A:CYS1417 4.8 35.8 1.0 C A:LEU1413 4.8 40.3 1.0 C A:CYS1018 4.9 41.2 1.0 O A:CYS1018 5.0 41.2 1.0

X.Wang, G.Yu, Y.Wen, Q.An, X.Li, F.Liao, C.Lian, K.Zhang, H.Yin, Y.Wei, Z.Deng, H.Zhang. Target Rna-Guided Protease Activity in Type III-E Crispr-Cas System. Nucleic Acids Res. V. 50 12913 2022.
ISSN: ESSN 1362-4962
PubMed: 36484100
DOI: 10.1093/NAR/GKAC1151