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Zinc in PDB 8gn4: The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg

Protein crystallography data

The structure of The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg, PDB code: 8gn4 was solved by F.D.Li, S.M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.19 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 30.866, 32.665, 36.105, 105.99, 90.46, 105.21
R / Rfree (%) 21 / 25.9

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg (pdb code 8gn4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg, PDB code: 8gn4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8gn4

Go back to Zinc Binding Sites List in 8gn4
Zinc binding site 1 out of 2 in the The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:12.0
occ:1.00
NE2 A:HIS744 2.0 20.4 1.0
NE2 A:HIS740 2.1 17.7 1.0
SG A:CYS727 2.2 14.7 1.0
SG A:CYS724 2.3 13.5 1.0
CD2 A:HIS744 3.0 19.7 1.0
CE1 A:HIS744 3.0 20.6 1.0
CE1 A:HIS740 3.0 17.4 1.0
CB A:CYS724 3.0 14.1 1.0
CD2 A:HIS740 3.1 17.0 1.0
CB A:CYS727 3.3 16.8 1.0
N A:CYS727 3.7 18.2 1.0
CA A:CYS727 4.0 18.3 1.0
ND1 A:HIS744 4.1 20.9 1.0
CG A:HIS744 4.1 20.1 1.0
ND1 A:HIS740 4.1 16.5 1.0
CG A:HIS740 4.2 16.1 1.0
C A:HIS726 4.3 18.7 1.0
CB A:TYR729 4.4 15.9 1.0
CD1 A:ILE743 4.4 18.2 1.0
CB A:HIS726 4.5 17.1 1.0
CA A:CYS724 4.5 15.1 1.0
C A:CYS727 4.6 18.2 1.0
N A:HIS726 4.7 16.5 1.0
CA A:HIS726 4.7 17.8 1.0
O A:CYS727 4.7 18.0 1.0
CG1 A:ILE743 4.8 17.1 1.0
O A:HIS726 4.9 20.3 1.0

Zinc binding site 2 out of 2 in 8gn4

Go back to Zinc Binding Sites List in 8gn4
Zinc binding site 2 out of 2 in the The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of ZBTB10 ZF1-2 R767Q in Complex with Telomeric Dna Ttaggg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn802

b:18.6
occ:1.00
NE2 A:HIS768 2.1 28.3 1.0
NE2 A:HIS772 2.2 31.4 1.0
SG A:CYS752 2.3 20.5 1.0
SG A:CYS755 2.3 17.8 1.0
CD2 A:HIS772 3.0 31.5 1.0
CD2 A:HIS768 3.1 27.6 1.0
CE1 A:HIS768 3.1 28.0 1.0
CB A:CYS752 3.2 19.5 1.0
CB A:CYS755 3.2 18.7 1.0
CE1 A:HIS772 3.3 32.0 1.0
N A:CYS755 3.6 19.4 1.0
CA A:CYS755 4.0 19.1 1.0
O A:HOH948 4.0 42.7 1.0
CG A:HIS768 4.2 27.0 1.0
ND1 A:HIS768 4.2 27.5 1.0
CG A:HIS772 4.2 32.4 1.0
ND1 A:HIS772 4.3 32.6 1.0
CB A:ILE754 4.5 21.5 1.0
CA A:CYS752 4.6 20.1 1.0
C A:ILE754 4.6 20.8 1.0
C A:CYS755 4.7 19.1 1.0
CG2 A:VAL771 4.7 29.7 1.0
CG2 A:ILE754 4.7 21.5 1.0
N A:GLY756 4.8 18.7 1.0
N A:ILE754 4.9 21.3 1.0
CA A:ILE754 4.9 21.6 1.0

Reference:

F.D.Li, S.M.Wang. Structural Insights Into ZBTB10 Recognition of Telomeric Variant Repeat Ttgggg To Be Published.
Page generated: Thu Dec 28 13:05:05 2023

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