Zinc in PDB 8gme: Crystal Structure of the GP32-Dda-DT17 Complex

The structure of Crystal Structure of the GP32-Dda-DT17 Complex, PDB code: 8gme was solved by X.He, M.K.Yun, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.56 / 4.98
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	109.862, 114.353, 147.379, 90, 90, 90
R / Rfree (%)	27.7 / 31

The binding sites of Zinc atom in the Crystal Structure of the GP32-Dda-DT17 Complex (pdb code 8gme). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the GP32-Dda-DT17 Complex, PDB code: 8gme:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the GP32-Dda-DT17 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the GP32-Dda-DT17 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:158.4 occ:1.00 SG A:CYS87 2.1 154.3 1.0 NE2 A:HIS64 2.2 153.2 1.0 SG A:CYS90 2.2 140.1 1.0 SG A:CYS77 2.2 144.4 1.0 CB A:CYS87 3.0 145.7 1.0 CD2 A:HIS64 3.1 147.2 1.0 CE1 A:HIS64 3.1 154.4 1.0 CB A:CYS90 3.3 145.3 1.0 CB A:CYS77 3.5 150.9 1.0 OG A:SER79 3.5 139.2 1.0 N A:CYS90 3.6 161.2 1.0 CA A:CYS90 3.9 155.2 1.0 ND1 A:HIS64 4.2 149.0 1.0 CG A:HIS64 4.2 146.8 1.0 C A:VAL89 4.3 164.6 1.0 CA A:CYS77 4.3 151.8 1.0 CB A:VAL89 4.4 161.8 1.0 CA A:CYS87 4.4 141.7 1.0 O A:CYS87 4.5 150.7 1.0 CB A:SER79 4.7 138.1 1.0 C A:CYS87 4.7 147.3 1.0 CA A:VAL89 4.8 165.3 1.0 N A:VAL89 4.9 164.8 1.0 N A:SER79 4.9 138.5 1.0 N A:SER78 4.9 149.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the GP32-Dda-DT17 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the GP32-Dda-DT17 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn500 b:181.2 occ:1.00 NE2 B:HIS64 2.1 182.3 1.0 SG B:CYS77 2.1 158.3 1.0 SG B:CYS87 2.1 190.2 1.0 SG B:CYS90 2.2 196.3 1.0 NH2 B:ARG111 3.0 179.7 1.0 CB B:CYS77 3.0 176.2 1.0 CE1 B:HIS64 3.1 183.0 1.0 CB B:CYS87 3.1 188.2 1.0 CD2 B:HIS64 3.1 185.6 1.0 CB B:CYS90 3.4 188.8 1.0 N B:CYS90 3.6 192.0 1.0 CZ B:ARG111 3.7 181.9 1.0 CA B:CYS90 3.9 190.0 1.0 CA B:CYS77 4.2 177.0 1.0 ND1 B:HIS64 4.2 184.5 1.0 CG B:HIS64 4.2 189.0 1.0 NE B:ARG111 4.3 179.9 1.0 NH1 B:ARG111 4.3 181.2 1.0 CA B:CYS87 4.5 192.3 1.0 CB B:VAL89 4.7 191.0 1.0 C B:VAL89 4.7 189.1 1.0 OG B:SER79 4.7 163.0 1.0 C B:CYS77 4.8 175.7 1.0 N B:SER78 5.0 178.6 1.0

X.He, M.K.Yun, S.W.White. Crystal Structure of the GP32-Dda-DT17 Complex To Be Published.