Zinc in PDB 8g7u: Cryo-Em Structure of Rnp End 2

All present enzymatic activity of Cryo-Em Structure of Rnp End 2:
2.3.2.27; 3.6.4.13;

The binding sites of Zinc atom in the Cryo-Em Structure of Rnp End 2 (pdb code 8g7u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Rnp End 2, PDB code: 8g7u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Rnp End 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rnp End 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:120.1 occ:1.00 SG A:CYS813 2.5 83.8 1.0 CB A:CYS813 2.5 83.8 1.0 SG A:CYS864 2.7 106.2 1.0 CG A:ARG866 2.8 96.2 1.0 SG A:CYS869 3.3 98.3 1.0 CB A:ALA815 3.5 86.0 1.0 CB A:ARG866 3.8 96.2 1.0 CD A:ARG866 3.8 96.2 1.0 CB A:CYS869 3.9 98.3 1.0 CA A:CYS813 4.1 83.8 1.0 NH1 A:ARG866 4.2 96.2 1.0 CB A:CYS810 4.2 89.9 1.0 CB A:CYS864 4.3 106.2 1.0 SG A:CYS810 4.3 89.9 1.0 NZ A:LYS536 4.7 84.2 1.0 NE A:ARG866 4.7 96.2 1.0 N A:CYS813 4.8 83.8 1.0 CA A:ALA815 4.8 86.0 1.0 N A:ALA815 4.8 86.0 1.0 C A:CYS813 4.8 83.8 1.0 CZ A:ARG866 4.8 96.2 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Rnp End 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Rnp End 2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1001 b:82.7 occ:1.00 SG C:CYS869 2.4 44.2 1.0 SG C:CYS810 2.5 20.2 1.0 SG C:CYS864 2.5 52.5 1.0 CB C:CYS810 2.9 20.2 1.0 CB C:CYS813 2.9 34.3 1.0 CB C:CYS869 3.2 44.2 1.0 CB C:CYS864 3.5 52.5 1.0 N C:CYS813 4.0 34.3 1.0 CA C:CYS813 4.0 34.3 1.0 SG C:CYS813 4.0 34.3 1.0 CG C:ARG866 4.4 61.6 1.0 CA C:CYS810 4.4 20.2 1.0 CZ2 C:TRP873 4.5 35.6 1.0 CB C:ALA815 4.5 31.0 1.0 C C:CYS813 4.5 34.3 1.0 CB C:ARG866 4.6 61.6 1.0 NE1 C:TRP873 4.6 35.6 1.0 N C:LYS814 4.6 24.5 1.0 N C:ALA815 4.7 31.0 1.0 CA C:CYS869 4.7 44.2 1.0 CB C:HIS871 4.9 34.9 1.0 CA C:CYS864 4.9 52.5 1.0 CE2 C:TRP873 5.0 35.6 1.0

W.Wang, A.M.Pyle. Cryo-Em Structure of Riplet:Rig-I:Dsrna Complex (End-Inter) To Be Published.