Zinc in PDB 8dqc: Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form)

The structure of Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form), PDB code: 8dqc was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.55 / 2.70
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	74.8, 90.095, 222.401, 90, 90, 90
R / Rfree (%)	22.1 / 25.9

The binding sites of Zinc atom in the Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form) (pdb code 8dqc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form), PDB code: 8dqc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:140.5 occ:1.00 SG A:CYS92 2.3 121.7 1.0 ND1 A:HIS58 2.3 120.5 1.0 SG A:CYS83 2.3 165.8 1.0 CB A:CYS92 3.0 127.5 1.0 CG A:HIS58 3.1 110.2 1.0 CB A:CYS83 3.2 141.4 1.0 CE1 A:HIS58 3.3 122.8 1.0 CB A:HIS58 3.3 101.9 1.0 OE2 A:GLU60 3.9 100.8 1.0 N A:CYS83 3.9 138.6 1.0 N A:CYS92 4.1 132.8 1.0 CA A:CYS92 4.1 130.2 1.0 CA A:CYS83 4.2 139.5 1.0 CD A:GLU60 4.3 100.2 1.0 CD2 A:HIS58 4.3 102.2 1.0 OE1 A:GLU60 4.3 96.3 1.0 NE2 A:HIS58 4.4 112.4 1.0 CA A:HIS58 4.9 94.9 1.0 O A:PRO90 4.9 144.9 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:98.7 occ:1.00 SG B:CYS83 2.3 74.4 1.0 SG B:CYS92 2.3 85.8 1.0 ND1 B:HIS58 2.3 81.7 1.0 CB B:CYS92 2.8 85.7 1.0 CG B:HIS58 3.1 80.5 1.0 CB B:HIS58 3.1 80.8 1.0 CE1 B:HIS58 3.4 74.2 1.0 OE1 B:GLU60 3.5 80.8 1.0 OE2 B:GLU60 3.7 81.6 1.0 CD B:GLU60 3.8 85.6 1.0 CA B:CYS92 4.0 90.2 1.0 CB B:CYS83 4.1 75.3 1.0 N B:CYS83 4.2 79.2 1.0 CD2 B:HIS58 4.3 83.0 1.0 N B:CYS92 4.3 89.0 1.0 NE2 B:HIS58 4.4 76.9 1.0 CA B:HIS58 4.7 82.2 1.0 CA B:CYS83 4.8 80.7 1.0 CG B:GLU60 5.0 80.7 1.0

L.Liu, S.Seibold, K.P.Battaile, S.Lovell. Crystal Structure of 3-Dehydroquinate Dehydratase I From Klebsiella Oxytoca (I222 Form) To Be Published.