Zinc in PDB 8d9h: Gramp-Tpr-Chat Match Pfs Target Rna(Craspase)

The binding sites of Zinc atom in the Gramp-Tpr-Chat Match Pfs Target Rna(Craspase) (pdb code 8d9h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Gramp-Tpr-Chat Match Pfs Target Rna(Craspase), PDB code: 8d9h:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Gramp-Tpr-Chat Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Gramp-Tpr-Chat Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1701 b:148.3 occ:1.00 CB B:CYS83 2.2 138.3 1.0 SG B:CYS125 2.2 125.4 1.0 SG B:CYS116 2.2 160.0 1.0 CB B:CYS122 2.2 131.3 1.0 SG B:CYS122 2.8 131.3 1.0 N B:CYS122 2.8 131.3 1.0 CA B:CYS122 3.0 131.3 1.0 SG B:CYS83 3.1 138.3 1.0 CB B:CYS125 3.4 125.4 1.0 CA B:CYS83 3.5 138.3 1.0 CB B:CYS116 3.5 160.0 1.0 N B:CYS83 3.6 138.3 1.0 C B:CYS122 3.9 131.3 1.0 O B:CYS122 3.9 131.3 1.0 C B:ALA121 4.1 137.0 1.0 N B:CYS125 4.1 125.4 1.0 SG B:CYS82 4.3 133.9 1.0 CA B:CYS125 4.3 125.4 1.0 C B:CYS83 4.5 138.3 1.0 CA B:ALA121 4.5 137.0 1.0 CB B:ALA121 4.7 137.0 1.0 O B:CYS83 4.7 138.3 1.0 CA B:CYS116 4.9 160.0 1.0 C B:CYS82 4.9 133.9 1.0

Zinc binding site 2 out of 4 in the Gramp-Tpr-Chat Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Gramp-Tpr-Chat Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1702 b:151.5 occ:1.00 SG B:CYS486 2.2 125.1 1.0 SG B:CYS496 2.3 127.6 1.0 CB B:CYS498 2.3 126.3 1.0 CB B:CYS486 2.3 125.1 1.0 SG B:CYS498 2.5 126.3 1.0 N B:CYS498 3.2 126.3 1.0 CA B:CYS498 3.2 126.3 1.0 N B:CYS486 3.4 125.1 1.0 CA B:CYS486 3.4 125.1 1.0 SG B:CYS501 3.6 118.5 1.0 CB B:CYS496 3.8 127.6 1.0 O B:CYS498 4.0 126.3 1.0 C B:CYS498 4.0 126.3 1.0 CB B:CYS501 4.3 118.5 1.0 CG1 B:VAL500 4.3 121.5 1.0 SD E:MET590 4.4 183.8 1.0 C B:ASN497 4.4 125.8 1.0 C B:CYS486 4.5 125.1 1.0 N B:ASN497 4.5 125.8 1.0 C B:GLY485 4.7 130.1 1.0 O B:CYS486 4.7 125.1 1.0 N B:CYS501 4.8 118.5 1.0 CE E:MET590 4.8 183.8 1.0 C B:CYS496 4.9 127.6 1.0 CA B:ASN497 5.0 125.8 1.0 CA B:CYS496 5.0 127.6 1.0

Zinc binding site 3 out of 4 in the Gramp-Tpr-Chat Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Gramp-Tpr-Chat Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1703 b:201.9 occ:1.00 O B:CYS745 1.9 192.1 1.0 SG B:CYS750 2.3 159.7 1.0 CB B:CYS745 2.3 192.1 1.0 SG B:CYS745 2.4 192.1 1.0 SG B:CYS747 2.4 173.0 1.0 C B:CYS745 2.7 192.1 1.0 CB B:CYS750 3.0 159.7 1.0 CA B:CYS745 3.0 192.1 1.0 N B:THR746 3.9 186.3 1.0 ND1 B:HIS742 3.9 203.7 1.0 CB B:CYS747 3.9 173.0 1.0 N B:CYS745 4.0 192.1 1.0 N B:CYS747 4.0 173.0 1.0 N B:CYS750 4.1 159.7 1.0 CA B:CYS750 4.2 159.7 1.0 CE1 B:HIS742 4.2 203.7 1.0 CA B:THR746 4.6 186.3 1.0 CA B:CYS747 4.6 173.0 1.0 C B:THR746 4.7 186.3 1.0

Zinc binding site 4 out of 4 in the Gramp-Tpr-Chat Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Gramp-Tpr-Chat Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1704 b:196.5 occ:1.00 SG B:CYS1013 2.3 166.6 1.0 SG B:CYS1401 2.3 174.2 1.0 SG B:CYS1412 2.3 153.5 1.0 SG B:CYS1409 2.3 157.3 1.0 CB B:CYS1401 2.8 174.2 1.0 CB B:CYS1412 2.9 153.5 1.0 CB B:CYS1013 3.2 166.6 1.0 CB B:CYS1409 3.4 157.3 1.0 N B:CYS1401 3.7 174.2 1.0 CA B:CYS1401 3.9 174.2 1.0 N B:CYS1409 3.9 157.3 1.0 CA B:CYS1412 4.2 153.5 1.0 CA B:CYS1409 4.2 157.3 1.0 CA B:CYS1013 4.3 166.6 1.0 N B:CYS1412 4.3 153.5 1.0 N B:CYS1013 4.3 166.6 1.0 O B:CYS1409 4.6 157.3 1.0 O B:CYS1013 4.7 166.6 1.0 C B:CYS1409 4.8 157.3 1.0 C B:CYS1013 4.8 166.6 1.0 C B:PRO1400 5.0 174.9 1.0 C B:CYS1401 5.0 174.2 1.0

C.Hu, S.P.B.Van Beljouw, K.H.Nam, G.Schuler, F.Ding, Y.Cui, A.Rodriguez-Molina, A.C.Haagsma, M.Valk, M.Pabst, S.J.J.Brouns, A.Ke. Craspase Is A Crispr Rna-Guided, Rna-Activated Protease. Science V. 377 1278 2022.
ISSN: ESSN 1095-9203
PubMed: 36007061
DOI: 10.1126/SCIENCE.ADD5064